Gene detail information of Glyur000187s00024040 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01490.2 | 2.00E-16 | Heavy metal transport/detoxification superfamily protein |
| NR | AFK36567.1 | 3.71E-55 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S8H5|I3S8H5_LOTJA | 1.00E-55 | Uncharacterized protein {ECO:0000313|EMBL:AFK36567.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00187 | 171879 | 213511 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000187s00024040.1 | PF00403.21 | HMA | 176 | 228 | 5.50E-08 |
| Glyur000187s00024040.2 | PF00403.21 | HMA | 76 | 129 | 5.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.608 |
| SRR1783600 | control | 20.310 |
| SRR1783602 | moderate drought stress | 9.622 |
| SRR1811619 | moderate drought stress | 9.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 453.556 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 451.075 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.364 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.403 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 668.848 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 673.077 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 79.559 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 84.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.513 |
| SRR2868004 | Drought Stress (root) | 29.612 |
| SRR2967015 | Control (root) | 98.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 142.094 |
| SRR9715740 | Leaf | 166.399 |
| SRR9715741 | Leaf | 115.751 |
| SRR9715739 | Root | 67.046 |
| SRR9715742 | Root | 199.690 |
| SRR9715743 | Root | 166.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 114.309 |
| SRR8749028 | MeJA induced 9h | 24.999 |
| SRR8749029 | MeJA induced 9h | 45.099 |
| SRR8749030 | Uninduced | 51.738 |
| SRR8749031 | Uninduced | 2.587 |
| SRR8749032 | Uninduced | 7.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.108 |
| SRR8400027 | Control - Root | 194.266 |