Gene detail

Gene detail information of Glyur000187s00024036

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53700.1	1.00E-16	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_006572968.1	1.10E-128	PREDICTED: pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SXD1\|PPR91_ARATH	1.00E-19	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial (Precursor)
trEMBL	tr\|K7K197\|K7K197_SOYBN	4.00E-129	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G02031.1}

Sequence

Transcript Sequence

>Glyur000187s00024036.1
ATGTCGGTGACATGCTTGCTTGGGCGTGGTTTGCTCCACAGCAGAGTTCACTCCCAACAACACCCATGCTCGTTTTGGTTGNATTCTNCTTCCGCATTGATGTTGGAAGAAGACCAGGTGTTTGATGAAAGTCCAAAATTTCATGCCAATTTTGTGACCANTAGTTGTGTAGCCCCAGTTCCCAGAGCCGAAAGGGAGTTGTTTCGTTTGGTAGTTAGGGTTATAAAGTCCTTGAATTGGAGGGTTGCAAGGGAAGTAAGGTTCGGGAGTTGGGTTGAGAGTCATGGGTTTTNTGATTCAATCAATTCATTCAGAATCATCATTCACACATTTGCCTCCGCAGGGATGCGTTTGGAAGTATTTGCTTTGCTTAGAGATATTGTTGGATGCTGTAATGAGGCCAAACATGATGCATTTGAATTGTTTTCAAATTTGCTGGATTCACCACCCCACCCTGTGGAAACGTCCTCTGTTGTTGTTGTTGTTGTGTTTGGTGTGCTCATGAAAGTGTTTGCTTCCAACTCTATGCTTGAACATGCGCTTGATGTGTTTGTGCGTGCTAAGCATGCTGGGCTTGAAACTGATATAATGTCTTGCAATTTNTTGTTGAAATGCCTTGTAGAAGCAAATAGAGTGGAGTTTGTGAGATGTCATTTTGAGGAATTGAGAGACTCCGGTCCGTCACCGAATATCTACACATGCTGGGCGCATGCTGATATTAGACGGGTTGCTGAGGTTTTAAGAAAGGTATATCGGAGTGGGGGAAACCCAACTGTTGTCACATATGGTACTTATATTCATGGACTTTGTAGAGTTGGTTCTGTTGAGGTTGCTCTGAAGTTAATTCATAAGTTGTGCTATAGAAACATGCCTCTCAGTAGCCATTGTTTTAATTCTGTCATTTATGGATTTTGTCAAAGAGGTGAAGTACATGAAGCTTTGCAGGTTTTGGAAGAGATGAAGAACTCTGGAAAATTGCCTAATGTCTATGCTACAGCATTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00187	140679	141718	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000187s00024036.1	PF01535.15	PPR	162	191	0.14
Glyur000187s00024036.1	PF12854.2	PPR_1	254	282	6.30E-07
Glyur000187s00024036.1	PF13041.1	PPR_2	294	330	9.00E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.930
SRR1783600	control	1.080
SRR1783602	moderate drought stress	2.245
SRR1811619	moderate drought stress	2.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.393
DRR006520	Root Summer glycyrrhizin high producing strain	0.310
DRR006521	Root Winter glycyrrhizin high producing strain	2.374
DRR006522	Root Winter glycyrrhizin high producing strain	2.257
DRR006523	Root Summer glycyrrhizin low producing strain	2.119
DRR006524	Root Summer glycyrrhizin low producing strain	1.963
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.240
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.241

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.532
SRR2868004	Drought Stress (root)	2.176
SRR2967015	Control (root)	2.550

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.431
SRR9715740	Leaf	0.565
SRR9715741	Leaf	0.335
SRR9715739	Root	0.425
SRR9715742	Root	3.169
SRR9715743	Root	2.303

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.456
SRR8749028	MeJA induced 9h	0.819
SRR8749029	MeJA induced 9h	0.227
SRR8749030	Uninduced	0.095
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.063

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.746
SRR8400027	Control - Root	4.846