Gene detail information of Glyur000187s00024035 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39710.1 | 1.00E-44 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | KHN04861.1 | 4.43E-161 | Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja] |
| Swissprot | tr|Q9FIX3|PP407_ARATH | 7.00E-48 | Pentatricopeptide repeat-containing protein At5g39710 |
| trEMBL | tr|K7K197|K7K197_SOYBN | 2.00E-161 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G02031.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00187 | 134102 | 140622 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000187s00024035.1 | PF13041.1 | PPR_2 | 8 | 57 | 3.80E-12 |
| Glyur000187s00024035.1 | PF01535.15 | PPR | 82 | 111 | 7.10E-06 |
| Glyur000187s00024035.1 | PF13041.1 | PPR_2 | 113 | 162 | 1.60E-11 |
| Glyur000187s00024035.1 | PF13041.1 | PPR_2 | 183 | 243 | 4.80E-13 |
| Glyur000187s00024035.1 | PF13041.1 | PPR_2 | 286 | 329 | 5.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.414 |
| SRR1783600 | control | 1.181 |
| SRR1783602 | moderate drought stress | 2.572 |
| SRR1811619 | moderate drought stress | 2.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.217 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.196 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.321 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.822 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.424 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.608 |
| SRR2868004 | Drought Stress (root) | 2.052 |
| SRR2967015 | Control (root) | 1.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.540 |
| SRR9715740 | Leaf | 0.486 |
| SRR9715741 | Leaf | 0.580 |
| SRR9715739 | Root | 0.411 |
| SRR9715742 | Root | 1.966 |
| SRR9715743 | Root | 2.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.730 |
| SRR8749028 | MeJA induced 9h | 1.367 |
| SRR8749029 | MeJA induced 9h | 1.252 |
| SRR8749030 | Uninduced | 0.516 |
| SRR8749031 | Uninduced | 0.337 |
| SRR8749032 | Uninduced | 0.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.971 |
| SRR8400027 | Control - Root | 4.418 |