Gene detail

Gene detail information of Glyur000187s00024033

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52640.1	0	heat shock protein 90.1
NR	XP_003533977.1	0	PREDICTED: heat shock protein 83-like [Glycine max]
COG	YP_003956340.1	4.00E-124	chaperone protein HtpG [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|P51819\|HSP83_IPONI	0	Heat shock protein 83
trEMBL	tr\|I1L314\|I1L314_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G24410.1}

Sequence

Transcript Sequence

>Glyur000187s00024033.1
ATGTGGTTTAATGGTGTTTGTTGGGCTTTGGATAAAATTCGATTCGAGTCTCTGACAGACAAGAGCAAGCTCGATGCACAACCAGAGCTTTTCATTAGGCTCGTGCCCGACAAGGAGAACAAGACACTATCCATCATAGACAGTGGCATTGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACCATTGCGAGGTCCGGGACAAAGGAGTTCATGGAGGCGTTGCAGGCTGGTGCTGACGTCAGCATGATTGGTCAGTTTGGTGTTGGGTTCTACTCTGCATATCTCGTTGCTGAGAAGGTTATTGTTACCACCAAGCACAATGATGATGAACAATACATTTGGGAATCGCAAGCCGGTGGTTCTTTCACTGTTACAAGAGATACTGAAGGCGAGCAGCTTGGGAGGGGAACCAAGATCACCCTTTTCCTCAAGGAGGATCAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGCTATCCCATTTACCTTTGGACTGAGAAGACCACTGAGAAAGAAATCAGTGATGATGAAGATGATGAGCCCAAGAAGGAGGAAGAAGGGGACAAGGAGAAAGAATCGAAAAAGAAGAAGAAAATCAAGGAGGTGTCTCATGAGTGGCAGCTCATCAACAAGCAGAAGCCAATCTGGCTGCGGAAGCCAGAAGAGATCACCAAGGAGGAATATGCCTCTTTCTACAAGAGCCTCACCAATGACTGGGAAGAGCACTTGGCCGTGAAGCATTTCTCTGTGGAGGGCCAACTTGAGTTCAAGGCCATCCTCTTCGTCCCAAAACGCGCACCCTTCGATCTGTTTGACACCAGGAAGAAGATGAACAACATCAAGCTTTATGTCAGGAGGGTGTTCATCATGGACAACTGCGAGGAGCTCATACCCGAGTACCTCGGATTCGTGAAGGGTGTTGTTGACTCTGATGACTTGCCCCTCAACATCTCTCGTGAGATGTTGCAACAGAACAAGATCCTGAAGGTGATCAGGAAGAACCTTGTGAAGAAGTGTATTGAGATGTTCAATGAGATTGCCGAGAACAAGGAAGATTACAACAAGTTCTATGATGCTTTCTCCAAGAATCTAAAGTTGGGCATTCACGAGGATAGCCAGAACAGGGCTAAACTTGCTGATTTGCTCAGATACCATTCTACAAAGAGTGGAGACGAAATGACAAGCTTGAAGGACTACGTTACCAGAATGAAAGAGGAGTACGATGGCAAGAAACTTGTTTCAGCCACAAAGGAAGGATTGAAACTAGATGACGAGTCTGAGGAGGAGAAAAAGAAGAAAGAGGAGAAGAAGAAGTCATTTGAGGAACTCTGCAAGAAAGTAGTTGTGTCTGACAGGATTGTGGATTCCCCATGCTGTTTGGTGACTGGTGAATATGGATGGACTGCAAACATGGAGAGGATCATGAAGGCACAGGCACTGAGGGACAACAGCATGAGCAGCTACATGTCTAGCAAGAAGACAATGGAGATCAACCCAGATAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAATGACAAGTCNACTGCACTCTTGACTTCAGGTTTTAGCCTTGATGATCCAAACACATTTGCTGCAAGGATTCATAGGATGTTGAAGCTGGGTCTTAGCATTGATGAGGAGGAGACTGGTGGGGATGATGTTGACATGCCTCCTTTGGAGGAGGATGGTGCTGAGGAAAGCAAGATGGAGGAAGGAAGAAAGAATTCGATTTGCATTCCACGGAGGAAGCGGGGGGGCGTGAGAGATGAACGCGAAGGCGACATGGTTGGCCCGATAACATCGGCATGGCGTTGGTCGTCGTCACGAGTCGGCGGCACTGGAGCGGTCGTCGTCGGAGACCAGATCGGCGGCGGAGAGGGCAACCTTCGTCGGTGGTTGATCGGAGACCATAAGGAACAGAATATCAGACATGGAGGATCACCGATCGTAAAACTAAAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00187	115100	120296	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0006950 response to stress

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000187s00024033.1	PF02518.21	HATPase_c	27	146	2.50E-09
Glyur000187s00024033.1	PF00183.13	HSP90	149	408	6.40E-138
Glyur000187s00024033.1	PF00183.13	HSP90	408	578	2.00E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.777
SRR1783600	control	5.796
SRR1783602	moderate drought stress	6.385
SRR1811619	moderate drought stress	6.093

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.210
DRR006520	Root Summer glycyrrhizin high producing strain	53.822
DRR006521	Root Winter glycyrrhizin high producing strain	9.455
DRR006522	Root Winter glycyrrhizin high producing strain	9.137
DRR006523	Root Summer glycyrrhizin low producing strain	88.468
DRR006524	Root Summer glycyrrhizin low producing strain	86.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.381
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.586
SRR2868004	Drought Stress (root)	9.768
SRR2967015	Control (root)	3.562

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.781
SRR9715740	Leaf	39.326
SRR9715741	Leaf	39.157
SRR9715739	Root	0.906
SRR9715742	Root	30.358
SRR9715743	Root	24.738

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.604
SRR8749028	MeJA induced 9h	14.654
SRR8749029	MeJA induced 9h	4.211
SRR8749030	Uninduced	1.174
SRR8749031	Uninduced	0.889
SRR8749032	Uninduced	3.376

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.787
SRR8400027	Control - Root	21.834