Gene detail

Gene detail information of Glyur000187s00024021.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48950.1	2.00E-157	Pectin lyase-like superfamily protein
NR	NP_001240215.1	0	uncharacterized protein LOC100785005 precursor [Glycine max]
COG	YP_004455771.1	3.00E-40	polygalacturonase [Melissococcus plutonius ATCC 35311]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	0	Probable polygalacturonase
trEMBL	tr\|C6T824\|C6T824_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G29780.1}

Sequence

Transcript Sequence

>Glyur000187s00024021.1
ATGAAGCCGTGTCCAAACCTCAGAAACCCCCATGTTGTTGGGGTTCTTTTCCTAGTTGTGTTATTGGGATCACTAGGAGTGAAGGTAGCAGAATGCAGAGTAGGTGCTACTGGATTGAATGAACTTGAGTACTCTGCTATCAATTGCAGGAAACACAGTGCAGTTTTGACTGATTTTGGTGGTGTTGGTGATGGCAAAACATCAAACACCAAGGCCTTTCAATATGCAATTGGNAATCTCAGCCAGTATGGTAATGATGGAGGAGCCCTACTTGTGGATGAATCAGAGTGGCCCCTACTTCCTGTTTTACCATCATATGGTAGAGGAAGGGATGCACCTGATGGAAGGTTTAGTAGTCTCATTTTTGGAACTAACCTCACAGATGTTGTAATCACTGGCTACAATGGGACAATTGATGGTCAAGGATCTTACTGGTGGGACAAGTTCCACAAGGGTGAAATGAATCAAACAAGGCCTTACATGGTTGAGATTATGTACTCAAATCAAATCCAAATATCAAATCTCACTTTGATCAATTCCCCCTCTTGGTTTGTTCACCCAATTTATAGCAGGTTTGAGAAAGAATTTTTTTTTTTCATTTGCATTCAATTGTTAATCTTAAAGCACTATATAAATGTCTGTCATTCTAATCATGCCTTATTCTGCTGCAGTGATATTATAATTCAAGGACTTACCATTNATGCACCAATTGACTCTCCCAACACAGATGGAATAGATCCTGATTCATGTACCAATGTTAGGATTGAAGACAGTCAAATTGTATCTGGTGATGATTGTGTTGCAGTGAAAAGTGGTTGGGATGAGTATGGAATAAAATTTGGAATGCCAAGCCANCACATAATAATCAGAAGGCTTAAATGTGTATCCCCAGATAGTGCCATGATTGCATTAGGCAGTGAAATGTCTGGTGGAATCCAAGACATTAGAGCTGAAGACCTCACAGCNATCAATACTCAATCAGCAGTTAGAATCAAAACTGCAGTTGGTAGAGGAGCATATGTGAAAGACATTTTTGTTAGAGGGATGAACTTGAAAACCATGAAGTATGTGTTTTGGATGACAGGTTCTTATGGATCACACCCTGACCCTGGTTTTGATCCCAAGGCACTTCCTAACATNACTGGAATAAACTATAGTAATGTGGTTGCAGAAAATGTGACATATTCAGCAAAACTTGAAGGGATCTCTAATGACCCTTTTACAGGAATTTGTATCTCTAATGTGAGTATCAATTATGTGGGGAAGAAATTGCAATGGAATTGCACTAATGTTGAAGGGTTCACAAGTGATGTCTCTCCTAAGCCTTGTGATTTGCTGCCTGAGAGGGAAGGGAGATTTGACTGTCCTTTCCCAGGTGACAAATTGCCTATTGAAAGTGTTCAGTTGAAGACTTGTTCCTTTAAAAGTGCCTCATACTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00187	1805	4904	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000187s00024021.1	PF00295.12	Glyco_hydro_28	120	184	1.20E-06
Glyur000187s00024021.1	PF00295.12	Glyco_hydro_28	222	435	4.20E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.025
SRR1783600	control	0.025
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.111
DRR006520	Root Summer glycyrrhizin high producing strain	0.148
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.133
SRR2868004	Drought Stress (root)	0.033
SRR2967015	Control (root)	0.092

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.045
SRR9715739	Root	0.000
SRR9715742	Root	0.121
SRR9715743	Root	0.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.001
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.717
SRR8400027	Control - Root	1.041