Gene detail

Gene detail information of Glyur000186s00009884.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G35710.1	1.00E-146	Protein kinase family protein with leucine-rich repeat domain
NR	XP_003553507.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Glycine max]
COG	YP_004775215.1	2.00E-57	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9LP24\|Y1571_ARATH	0	Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor)
trEMBL	tr\|I1N9T8\|I1N9T8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35070.1}

Sequence

Transcript Sequence

>Glyur000186s00009884.1
ATGGCAACTTTACAAAAGGCTAATGCTCTTCTCTTTTATTATATACTATTGATATCTTTGCTGCTTCCAGTGATAATCACAGCATCACAAAGAGAAGAAGCAGAAGCCCTTGTCAAATGGAAAAACACTCTATCCCCTCCTCTTCCTCCTCTCATAAATTCATGGTCACTCACCAACCTTGCCAACCTTTGCAACAACTGGGGTGCTGTTGTTTGTGACGACACCAACACAACAGTCTCAGAGATAAACTTCTCTGGTGCAAACCTCACTGGGACACTCACTGGCTTGGATTTTGCTTCACTCCCCAACCTCACAAGCCTCAACCTCAATGACAACAGTTTTGGTGGGTCAATACCACCATCAATTGGCAACCTCTCCAAGCTCACTTTCTTGGACTTGGGAAGCAACTTATTTGAAGGTACTGTTCCCTATCAACTCACCAATCTCCCCAAGGTATGGTACCTTGACCTTGGAGAAAACTACTTTACATCCCCTCCTGATTGGTCCAAATATTCAGGCATGCCTTCCTTAACTTCCCTTGATTTGAAGGAGAATGAGTTCACTGGTGAGTTCCCAAGTTTNATACTTGAGTGCCATAACTTGACTTACCTTGACCTCTCTCAGAACAATTGGAATGGCACAATACCAGAATCCATGTATAGCAACCTGGGCAGGCTCGAATACCTCAACCTCACCAACTGTTTACTAGAAGGGAAACTGTCATCCAACTTGTCCATGCTCTCAANCCTTAAAGACCTTCGTATAGGTAATAACATGTTTGATGGTCCTATTCCCACAGAGTTAGGATTGATATCTGGCCTTCGGATTCTTGAATTGAACAAAATTTCAGCCCATGGGGGAATTCCTTCTTCCATAGGCCAATTGAGGGAGCTAGTGCGCCTTGATCTGAGTGAGAATTTCTTGAACTCTACAGTCCCTTCTGAGCTTGGCCTATGCACAAATCTAACTTTCCTTAGTTTAGCAGAAAATAATCTGACAGGTCCCTTGCCTTTGTCATTAGCANATTTGGCAAAACTAACAGATTTGGGATTATCAGATAATTCCTTTTCTGGCCAAATTTCTGCTTCACTGATCTCTAATTGGACAGAGTTGATCTCTTTGCAAGTCCAAAACAATCAATTAACGGGAAAGGTTCCTCCACAGATAGGATTGTTGAAAAAAATTAAGTTCCTTTTTCTGTACAAAAATCTTTTCTCTGGTCCCATTCCTGAAGAGATTGGGAACCTGAAGGAAATGACAGAGTTAGACCTTTCAGGAAACCACTTCTCTGGTCCAATTCCACCAACCATTTGGAATCTGACAAACATTGAAATCATAAACCTTTTCTTCAACNACCTCTCTGGGACCATTCCCGTGGAAATTGGAAACTTAACCTCACTGCAAACTTTTGATGTCAACACTAATAATTTGGATGGAGAATTGCCTGAGACCATTGCTCACCTAACTGCCTTAACATATTTTTCTGTGTTCACCAATAACTTCTCTGGCAGCATTCCNAGAGATTTTGGAAAGAATAGTCCTTCTCTGGCTCATTTCTACCTTTCAAACAACAGCTTCTCAGGAGAACTGCCTCCTGAACTGTGCAGTGACCTCAAGCTAGTTGTTTTGGCTGTCAATAACAACAGCTTATCTGGGCCATTGCCAAAGTCCTTGAGAAATTGTTCATCCTTGACACGAGTCCGGCTTGATGACAACCAGTTCACNGGAAACATCACAGAAGCATTTGGGGTTCATCCAAATCTTGTCTTTCTCTCACTCAGTAGAAACCAACTTGTTGGTGATCTCTCCCCACAGTGGGGTGAATGTGTCAACTTAACTGAGATGGAAATGAGTGGAAACAAAATTTCTGGAAAAATTCCATCTGAGCTAAGTAAGCTTAGTAAACTACAATATCTAAGCCTTCACTCCAACAATCTCACAGGCAATATCCCACCTGAAATTGGAAATCTAGGCCTGCTCTACATGTTCAACTTGAGCAACAACCATTTGTCAGGTGAAATCCCAGAAAGTATTGGCAGAATGGCTTGGCTTAACCATCTTGATCTATCAGATAACAACTTCAGTGGAAGCATTCCTAAAAAGCTCAGTGATTGTAACCGCTTACTGAGCCTGAATCTAAGCCATAACAACCTANCTGGGGAGATACCATATGAACTTGGCAACCTGTTCTCACTCCAATCNTTGTTGGACCTCAGCAGCAACACTCTTTCAGGTCCAATTCCTCAAAACCTTCAAAAGCTAGCATCACTGGAGATTCTCAATCTCTCACACAATCACCTATCTGGGACTATCCCACAATCCTTTTCAAGCATGCTTAGCCTCCAATCTGTGGATTTTTCTTACAACCACTTGACTGGTTTGATCCCAAAAGGTGGTGTTTTCAACACATCAACTGCAGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACCTGTGCCAACAATGCATTGTCCCCTGACAACAACTCTGGAGGGGCTAACAAAAAGGTTCTCCTTGGTGTCATTTTACCAGTTTGTGGGTTAGTATTCATAGCAATGATTGGTGTTGGAATCAAACTGTTCAGAAGGCAAGCCAAACACCTTGATGAAGAGTCCAAAAAAAGCATTGAAGACAATGATCATCGGTCTATCTGCATGGTATGGGGAAGAGATGGGAAATTCACATTCTCAGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTTGGGAGTGTTTATAGAGCAGGATTATCTAGTGGTCAAGTTGTTGCAGTGAAAAGGCTCAACATATCAGACTCTGATGACATTCCACAAGTGAACCGCCAAAGCTTTCTGAATGAGATAAAGACCCTTACAGGAGTGAGGCACAGGAACATAATAAAGCTTTATGGGTTCTGTTCTAGGAGGAGACAGATGTTCCTGGTTTATGAACATGTAGAGAGAGGGAGTTTGGGGAAGGTGTTGTATGGTGAAGAAGGGACACTGGAGCTGAACTGGGATACAAGGATAATGATGGGAAAGCACCCTGGAGAACTATTGTCTGTCATGCATTCTTCANACAAGTCTTCTTGGTCATCAATGGAGGTGCTTCTGAAGGATGTTCTTGACCAACGGCTTCCACCACCAACGGGCCAATTAGCTGAAACAATAGTGTTCACAGTGACCGTAGCTATTGCATGCACACGTGCGGATCCTGAGTCCAGACCCATGATGCGTTCTGTGGCACAGGAACTATCCGCTACTACGCAGGCTTGTCTTTCCGAGCCATTTGGCATGATAACCATGGGCAAGCTTACAGGGTTCAAGAAGAAATAG

Protein Sequence

>Glyur000186s00009884.1
MATLQKANALLFYYILLISLLLPVIITASQREEAEALVKWKNTLSPPLPPLINSWSLTNLANLCNNWGAVVCDDTNTTVSEINFSGANLTGTLTGLDFASLPNLTSLNLNDNSFGGSIPPSIGNLSKLTFLDLGSNLFEGTVPYQLTNLPKVWYLDLGENYFTSPPDWSKYSGMPSLTSLDLKENEFTGEFPSXILECHNLTYLDLSQNNWNGTIPESMYSNLGRLEYLNLTNCLLEGKLSSNLSMLSXLKDLRIGNNMFDGPIPTELGLISGLRILELNKISAHGGIPSSIGQLRELVRLDLSENFLNSTVPSELGLCTNLTFLSLAENNLTGPLPLSLAXLAKLTDLGLSDNSFSGQISASLISNWTELISLQVQNNQLTGKVPPQIGLLKKIKFLFLYKNLFSGPIPEEIGNLKEMTELDLSGNHFSGPIPPTIWNLTNIEIINLFFNXLSGTIPVEIGNLTSLQTFDVNTNNLDGELPETIAHLTALTYFSVFTNNFSGSIPRDFGKNSPSLAHFYLSNNSFSGELPPELCSDLKLVVLAVNNNSLSGPLPKSLRNCSSLTRVRLDDNQFTGNITEAFGVHPNLVFLSLSRNQLVGDLSPQWGECVNLTEMEMSGNKISGKIPSELSKLSKLQYLSLHSNNLTGNIPPEIGNLGLLYMFNLSNNHLSGEIPESIGRMAWLNHLDLSDNNFSGSIPKKLSDCNRLLSLNLSHNNLXGEIPYELGNLFSLQSLLDLSSNTLSGPIPQNLQKLASLEILNLSHNHLSGTIPQSFSSMLSLQSVDFSYNHLTGLIPKGGVFNTSTAEAYVGNSGLCGEVKGLTCANNALSPDNNSGGANKKVLLGVILPVCGLVFIAMIGVGIKLFRRQAKHLDEESKKSIEDNDHRSICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAGLSSGQVVAVKRLNISDSDDIPQVNRQSFLNEIKTLTGVRHRNIIKLYGFCSRRRQMFLVYEHVERGSLGKVLYGEEGTLELNWDTRIMMGKHPGELLSVMHSSXKSSWSSMEVLLKDVLDQRLPPPTGQLAETIVFTVTVAIACTRADPESRPMMRSVAQELSATTQACLSEPFGMITMGKLTGFKKK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00186	249161	253259	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000186s00009884.1	PF12799.2	LRR_4	102	138	1.50E-07
Glyur000186s00009884.1	PF13855.1	LRR_8	175	236	1.70E-07
Glyur000186s00009884.1	PF13504.1	LRR_7	320	334	4.6
Glyur000186s00009884.1	PF00560.28	LRR_1	420	440	0.26
Glyur000186s00009884.1	PF00560.28	LRR_1	515	536	0.88
Glyur000186s00009884.1	PF00560.28	LRR_1	635	657	0.022
Glyur000186s00009884.1	PF00560.28	LRR_1	684	703	0.17
Glyur000186s00009884.1	PF00560.28	LRR_1	708	729	0.41
Glyur000186s00009884.1	PF13855.1	LRR_8	736	791	1.10E-07
Glyur000186s00009884.1	PF07714.12	Pkinase_Tyr	917	1015	3.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.661
SRR1783600	control	1.635
SRR1783602	moderate drought stress	0.265
SRR1811619	moderate drought stress	0.253

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.730
DRR006520	Root Summer glycyrrhizin high producing strain	9.672
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	10.499
DRR006524	Root Summer glycyrrhizin low producing strain	10.615
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.926
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.983

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.475
SRR2868004	Drought Stress (root)	7.805
SRR2967015	Control (root)	4.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.819
SRR9715740	Leaf	10.355
SRR9715741	Leaf	12.201
SRR9715739	Root	6.627
SRR9715742	Root	22.339
SRR9715743	Root	20.441

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.282
SRR8749028	MeJA induced 9h	1.057
SRR8749029	MeJA induced 9h	0.449
SRR8749030	Uninduced	0.545
SRR8749031	Uninduced	0.250
SRR8749032	Uninduced	0.110

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.650
SRR8400027	Control - Root	1.441