Gene detail

Gene detail information of Glyur000186s00009875

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G51200.1	Protein of unknown function (DUF3414)
NR	XP_004515148.1	PREDICTED: nuclear pore complex protein Nup205-like isoform X1 [Cicer arietinum]
Swissprot	tr\|F4KBW6\|NU205_ARATH	Nuclear pore complex protein NUP205 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|K7KWK9\|K7KWK9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G29565.1}

Sequence

Transcript Sequence

>Glyur000186s00009875.1
ACTTGCTGCTTGCACTATACTTACCCCCGAGTTGCAGCAATTTTCACTCATTTCCCGCCCTGCTCGCCCTAGGCGAAATACGGACCCAGCTAACGCATTTGTTTCTCTTTTCTCTCTGCTCTACCTGCAGAATCTGTTGCTGTTGTAGGGTTTCATTTCATCGCAAATGGTCTCTCCGAAGCAGCTCCTAGCCACTCTCGAATCAGCGCTCCTCGCCCCTTCGCCACCGACACCGGCGCAAAGAGTCGAACTCCTACACGCCGTTCGCACCTCTATCCACTCCTTCCACTCCCTCCTTTCCTGTCCGCCCCCAAAGCCCTCTGATCGAAGTCAAGTACAGTCAAAGTCCGTTAGGCTTCCAGACTCTCCCCCGATCTCTCTTGATGACCAGGATGTGCAGATTGCACTCAAATTGAGTGATGATCTCCATCTCAATGAAGTAGATTGTGTTCGCTTGCTTGTAGCTGCTAATCAAGAGTGGGGCTTAATGGGAAGGGAACCACTGGAAATTCTACGGCTTGCAGCAGGACTCTGGTATACAGAAAGAAGATATTTGATAACATCTCTCCATTTGCTGTTAAGGGCTGTTGTGCTTGATCAAGGACTTGAAGATGATATATTGGTTGACATTCAGAAATATCTGGAAGATCTTATCAATTCTGGACTTAGACAGCGGTTGATTTCTCTTATCAAGGAACTCAATAGAGAAGAACCTTCTGGTTTGGGTGGTCCTCAATGTGAGCGCTATGTTCTTGATTCAAGAGGTTCTCTCGTGGAAAGGCAGGCAGTGGTGTCTAGAGAAAGACTTATTTTAGGACATTGCCTTGTCCTTTCTGTTCTGGTTGTTCGGACAAGTCCTAAGGATGTAAAAGACCTTTTCTATGTTTTGAAAGATAGTGTTTCTGGAGTGAGTGAGAGCAATACCACCATAAAACATCAGATTACCTTTAGTCTTCTATTTGCTCTTGTGATTGCATTTGTTTCAGATGGTTTGGGTACAGTGCCTGACAAAGCATCTGTCCTTTCTTCTGATACATCCTTCAGACATGAATTTCATGCACTTGTAATGGCTACTGGAAATGATCCAATTGTTGAGGGCTTCACTGGTGGCATAAGGCTTGCTTGGGTGGTACATTTGATGTTAATACAAGATGTTGTTGCAGCAAGGGAAACTGTTTCAAGTGGTTCATCAAATGAAATGGGTTATCTCAGTCAATGCTTGGAAGTCATTTTCTCAAATAATGTTTTTCAGTTTTTACTGGATAAAGTTCTTCGTACTGCTGCCTACCAGACTGAAGATGAAGACATGATCTATATGTACAATGCTTATCTGCACAAGCTGATTACGTGCTTCTTGTCTAACCCTCTTGCAAGAGACAAGATAAAAGAATCCAAGGAGAAGGTTATGAGTGTTCTTAGTCCATATCGAGTTGTTGGATCTCNTGATTTTGCACAGGACAGGAACTCGAGTTCTCTACATGGAACTGAAACAGGCCCTTCACCATTTAATTCAATCTTGGACTTTGTTAGTGAAATTTATCAGAAAGAACCAGAGCTCTTGTTGGGCAATGATGTGCTGTGGACATTTGTAAATTTTGCTGGAGAGGACCATACAAATTTCCAGACACTTGTGGCATTTTTGAATATGCTGAGCACCTTGGCTTCTANTCAAGAAGGTGCATCAAAGGTTTATGAGTTGCTGCAAGGTAAAGCATTCCGCTCGATTGGATGGAGCACTTTGTTTGAATGCTTGACAATTTATGATGAGAAATTCAAACAGTCCCTTCAAACTGCTGGAGCAATGTTGTCTGAAATTCAGGAGGGCGATGCACAAGCACTNGTGGCCTACTTAAATGTTCTAAAGAAGGTTGTGGAAAATGGAAACCCTACAGAAAGGAAAAACTGGTTTCCTGATATTGANCCACTGTTCAAACTTCTTAGTTACGAAAATGTACCCCCTTATCTTAAGGGTGCTTTAAGGAATGCAATAGCCACATTTATTCAGGTCTCTCCACTGTTGAAGGACAGCATTTGGGCCTATCTTGAGCAATATGATCTGCCAGTGGTTGTTGGGCCTGATGTCCAGAACAGTTCATCCTTTGGTACTCAGGTTTATGATATGCAATTTGAATTAAATGAGATTGAAGCAAGGAGAGAACAATATCCTTCAACTATATCTTTCCTTAACTTGATAAATGCTCTTATTGCTGAAGAAAGAGATTTGACTGATAGAGGGAGAAGGATACTAAGCATGTATGATATCAAGGATGAGGACTATGAGGGTGTAGTTGATCAGTCTCGACATTCAACAACTAAAGAATCAACATCACTTCAGACACAACTTCCTGTTTTAGAGTTGCTGAAGGATTTCATGAGTGGAAAGACTGCCTTTCGGAACATAATGAGTATTCTTCTGCCAGGGGTGAATTCCATCATATCCGAACGCAGTAGTCAAATACATGGGCAGCATTTAGAGAAAGCAGTGCAACTTTCACTGGAAATTATAATACTTATCCTTGAAAAAGATTTACTTCTTTCTGATTATTGGCGTCCTCTATACCAGCCCTTGGATATTATACTCTCGCACGATCATAATCAAATAGTGACCCTGTTGGAGTATGTCAGATATGATTTTCAGCCAAAAGCCCAGCAATCATCTATTAAAATCATGAGTATTTTAAGCTCTCGCATGGTTGGGCTTGTTCAACTATTGCTAAAATCTAATGCCTCAAACAGCTTGATAGAAGATTATGCAGCCTGCCTTGAGTCACGGTCAGAAGAGTCCCAGAATCTTCTAATTGACAACATCAGCAGGCCAGCTCCAAATATCACTCATTTTCTACTTAAATTTGACCTAGACACGCCTGTTGAGCGGACAGTTATTCTTGATATCCTGGAGAAGCTTCTGAAGCCTGATGTAAATGCATTACTTCATGAATTTGGTTTTCAGCACATTGACACAATTTGTATTGCTGCACTTCCTAAACGTAATAGCAATCAGCCCCTTCGTATCAGTTCCCTTCATCAGCGAGCATGGCTCTTAAAACTTTTAGCAGTTGAACTACATGCTGGTGATGTTAGTAGCTCCAAACATAGAGATGCATGTCAGACAATCCTTTCTCATCTTTTTGGACAAGGTATCACTGAAATTGGTGGAAGCCTGGCCATTTCTCCATTTTCGCTTCAAGATACTTCTGAAAATGCTGCTGTTAGAACTGTCAGTAAGAGTAAGGTATTAGAATTGCTTGAAATCATCCAGTTTAGATGTCCAGATTCCACTACTAAGCTCTCTAATATTGTGGCTGGAATGAAGTTTGACCTGCTGGCAGAAGACATACTGGGAAATCCAGGGAATTCCGGAAAGGGTGGTGTCTACTATTATTCTGAGAGAGGTGACCGACTAATTGACCTTGCTTCCTTCCATGACAAACTTTGGCAGAAATATAATTCTGCATATCATCAGACGAATAACCTTGGTAATGAAGTTGAGCTAAATGATGTACGAGAGACAATTCAACAGTTGCTGAGATGGGGATGGAAATACAATAAAAATCTTGAGGAACAAGCTGCACAACTACATATGCTGACTGCCTGGTCTCAGATTGTCGAGGTAGCATTGACATGCATGGCTAAACTGCGAGATGAAAGGTTTATGTTCCCTGGCAGTCTGAGTTCTGATAATATCACATGCCTTGATCTCATTGTTGTGAAACAATTATCAAATGGTGCTTGTTTGACCATATTGTTTAAGCTTATCATGGCAATTCTTAGAAATGAATCATCAGAAGCTCTTAGAAGACGTCAATATGCCTTGCTTCTTAGCTATTTCCAGTATTGTCAGAATGTTGTTGATCCGGATGTTCCAACCTCAGTTCTTCAATTCTTGCTGCTCAATGAACAAGATAACGAATATATTGATCTCCCAAAGATTGACAAAGAACAGGCAGAACTGGCTCATGCAAATTTTTCTACTTTGAGGAAAGAGGCTCAGAGCATATTGGATTTGGTCATAAAAGATGCAACCCATGGCAGTGAACCTGGAAAGACAATTGCACTCTATGTTCTTGATGCATTGATTTGTATAGACCATGAGCGATATTTCTTGAGTCAACTTCAAAGCAGGGGATTTTTAAGGTCTTGCTTTACTGCCATAAGCAATGTTTCCAATCAGGATGGTGGTCTTTCGCTGGACTTATTGCAGAGGGCATGTACCTTTGAGGCTGAACTTGCTGTACTGCTAAGAGTCAGTCACAAATATGGGAAATCTGGAGCTCAGGTACTATTTTCCATGGGCATATTGGAGCATCTTGTATCGGGTAGGGCAATCAATTTGCAGGGAGGATTAAGGTGGATTGATACAAGACTTAGAAGAGATATGGCTGTGGATGTTGATAGACAACGAATGATTATAAATCCAGTCTTGAGATTAGTCTTTTCATTAACTTCCTTGGTTGATACATCAGATTTTATGGAGGTGAAGAATAAAGTTGTTCGTGAGTTGATTGATTTTGTCAAAGGGCATCAATCACTCTTTGATCAAGTTCTCCGTTTAGACATTGCGGAAGCAGATGAGTTAAAAATGGAGCAGATCAATCTAGTTGTTGGTATTCTTAGCAAGGTTTGGCCATATGAAGAGAGCGATGAGTATGGTTTTGTTCAAGGGCTTTTTGGGATGATGCGTGCTCTTTTNTCTCGTGACTCGAACTTAAAGGTTCCTGGTTTTGCTCAATCAAGAGTGTCACCTGAGAATCAGAGGAATTCAGAACTACAGATATTTAACTTGTGCTTCAGCTTGAGCTCTTACTTATATTTTCTNGTTACAAAGAAATCCCTGAGATTACAGTCTTCAGATGCCTCCTCCAGTTACCCTACTTCCATTGAACTTCAACAACCCACATTGATCTTGCTTAATTCTCTTCTTACATCTGTTACAACTGCACTTGAAAGGNCGGCTGAGGAGAAATCCTTATTACTGAATAAGATTCGAGACATAAATGAATTGTCAAGGCAGGAGGTGGATGAAATCATCAGTATGTGTGTCCGGCAAGACTCTGTTTCATCATCNGACAACATTCATAAAAGGAGATACATTGCAATGGTAGAAATGTGTCGAGTTGTTGCTTGTAGGGATCAGCTAATCATTTTGTTACTTCCGCTCTCAGAACATGTGCTAAATATCATCCTCATCCATCTTCAGGAGAGCTCTGTTGCACTTGATTCTACCATGACCGCAAAAACAATTACATATGGTGCAAAATATGATCCGCAACAGGATATTGCTTTGTTATGTGATAAGTTGGTTCCAACCCTTGAACGACTAGAGTCGCTGAGTGAGGACAAAGTAGGGCATAATCTCAAAGTATTCCGCAGATTAGCAACTTCTGCCAAAGAGATTGCAATTCAAAAGTTGATTTTGTAGATATTTTAAAGTATCCTTACAAATTCAATTACTTGAGTTGACTGCGTGTACACTGTAAATTATATCAAATAGTCACGTCNAATTGAGTTCAATATGTAAGATATCAACTTCACACCTTGCAGTTCGTATGCAGGAGATTTTGTAGTGTATTGG

Protein Sequence

>Glyur000186s00009875.1
MVSPKQLLATLESALLAPSPPTPAQRVELLHAVRTSIHSFHSLLSCPPPKPSDRSQVQSKSVRLPDSPPISLDDQDVQIALKLSDDLHLNEVDCVRLLVAANQEWGLMGREPLEILRLAAGLWYTERRYLITSLHLLLRAVVLDQGLEDDILVDIQKYLEDLINSGLRQRLISLIKELNREEPSGLGGPQCERYVLDSRGSLVERQAVVSRERLILGHCLVLSVLVVRTSPKDVKDLFYVLKDSVSGVSESNTTIKHQITFSLLFALVIAFVSDGLGTVPDKASVLSSDTSFRHEFHALVMATGNDPIVEGFTGGIRLAWVVHLMLIQDVVAARETVSSGSSNEMGYLSQCLEVIFSNNVFQFLLDKVLRTAAYQTEDEDMIYMYNAYLHKLITCFLSNPLARDKIKESKEKVMSVLSPYRVVGSXDFAQDRNSSSLHGTETGPSPFNSILDFVSEIYQKEPELLLGNDVLWTFVNFAGEDHTNFQTLVAFLNMLSTLASXQEGASKVYELLQGKAFRSIGWSTLFECLTIYDEKFKQSLQTAGAMLSEIQEGDAQALVAYLNVLKKVVENGNPTERKNWFPDIXPLFKLLSYENVPPYLKGALRNAIATFIQVSPLLKDSIWAYLEQYDLPVVVGPDVQNSSSFGTQVYDMQFELNEIEARREQYPSTISFLNLINALIAEERDLTDRGRRILSMYDIKDEDYEGVVDQSRHSTTKESTSLQTQLPVLELLKDFMSGKTAFRNIMSILLPGVNSIISERSSQIHGQHLEKAVQLSLEIIILILEKDLLLSDYWRPLYQPLDIILSHDHNQIVTLLEYVRYDFQPKAQQSSIKIMSILSSRMVGLVQLLLKSNASNSLIEDYAACLESRSEESQNLLIDNISRPAPNITHFLLKFDLDTPVERTVILDILEKLLKPDVNALLHEFGFQHIDTICIAALPKRNSNQPLRISSLHQRAWLLKLLAVELHAGDVSSSKHRDACQTILSHLFGQGITEIGGSLAISPFSLQDTSENAAVRTVSKSKVLELLEIIQFRCPDSTTKLSNIVAGMKFDLLAEDILGNPGNSGKGGVYYYSERGDRLIDLASFHDKLWQKYNSAYHQTNNLGNEVELNDVRETIQQLLRWGWKYNKNLEEQAAQLHMLTAWSQIVEVALTCMAKLRDERFMFPGSLSSDNITCLDLIVVKQLSNGACLTILFKLIMAILRNESSEALRRRQYALLLSYFQYCQNVVDPDVPTSVLQFLLLNEQDNEYIDLPKIDKEQAELAHANFSTLRKEAQSILDLVIKDATHGSEPGKTIALYVLDALICIDHERYFLSQLQSRGFLRSCFTAISNVSNQDGGLSLDLLQRACTFEAELAVLLRVSHKYGKSGAQVLFSMGILEHLVSGRAINLQGGLRWIDTRLRRDMAVDVDRQRMIINPVLRLVFSLTSLVDTSDFMEVKNKVVRELIDFVKGHQSLFDQVLRLDIAEADELKMEQINLVVGILSKVWPYEESDEYGFVQGLFGMMRALXSRDSNLKVPGFAQSRVSPENQRNSELQIFNLCFSLSSYLYFLVTKKSLRLQSSDASSSYPTSIELQQPTLILLNSLLTSVTTALERXAEEKSLLLNKIRDINELSRQEVDEIISMCVRQDSVSSSDNIHKRRYIAMVEMCRVVACRDQLIILLLPLSEHVLNIILIHLQESSVALDSTMTAKTITYGAKYDPQQDIALLCDKLVPTLERLESLSEDKVGHNLKVFRRLATSAKEIAIQKLIL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00186	185544	212445	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005643 nuclear pore

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000186s00009875.1	PF11894.3	DUF3414	8	683	1.20E-97
Glyur000186s00009875.1	PF11894.3	DUF3414	692	906	2.30E-22
Glyur000186s00009875.1	PF11894.3	DUF3414	946	1158	2.70E-28
Glyur000186s00009875.1	PF11894.3	DUF3414	1150	1506	2.00E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.636
SRR1783600	control	10.687
SRR1783602	moderate drought stress	15.171
SRR1811619	moderate drought stress	15.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.738
DRR006520	Root Summer glycyrrhizin high producing strain	11.484
DRR006521	Root Winter glycyrrhizin high producing strain	11.805
DRR006522	Root Winter glycyrrhizin high producing strain	11.368
DRR006523	Root Summer glycyrrhizin low producing strain	14.746
DRR006524	Root Summer glycyrrhizin low producing strain	14.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.223
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.133

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.068
SRR2868004	Drought Stress (root)	15.869
SRR2967015	Control (root)	16.896

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.949
SRR9715740	Leaf	5.834
SRR9715741	Leaf	4.414
SRR9715739	Root	1.435
SRR9715742	Root	10.809
SRR9715743	Root	8.970

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.317
SRR8749028	MeJA induced 9h	12.786
SRR8749029	MeJA induced 9h	11.270
SRR8749030	Uninduced	2.079
SRR8749031	Uninduced	1.296
SRR8749032	Uninduced	2.030

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.571
SRR8400027	Control - Root	23.278