Gene detail information of Glyur000186s00009873 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07880.1 | 1.00E-25 | Immunoglobulin E-set superfamily protein |
| NR | XP_003554297.1 | 1.56E-90 | PREDICTED: rho GDP-dissociation inhibitor 1 [Glycine max] |
| Swissprot | tr|Q9SFC6|GDIR_ARATH | 3.00E-31 | Rho GDP-dissociation inhibitor 1 |
| trEMBL | tr|I3SF08|I3SF08_LOTJA | 7.00E-86 | Uncharacterized protein {ECO:0000313|EMBL:AFK38850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00186 | 162285 | 164571 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000186s00009873.1 | PF02115.12 | Rho_GDI | 35 | 155 | 1.90E-21 |
| Glyur000186s00009873.1 | PF02115.12 | Rho_GDI | 173 | 217 | 1.50E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.451 |
| SRR1783600 | control | 24.128 |
| SRR1783602 | moderate drought stress | 10.184 |
| SRR1811619 | moderate drought stress | 10.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.402 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.403 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 38.836 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.144 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.334 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.336 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.574 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.536 |
| SRR2868004 | Drought Stress (root) | 33.017 |
| SRR2967015 | Control (root) | 32.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.571 |
| SRR9715740 | Leaf | 7.760 |
| SRR9715741 | Leaf | 11.995 |
| SRR9715739 | Root | 7.326 |
| SRR9715742 | Root | 12.834 |
| SRR9715743 | Root | 10.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.315 |
| SRR8749028 | MeJA induced 9h | 12.639 |
| SRR8749029 | MeJA induced 9h | 17.576 |
| SRR8749030 | Uninduced | 2.463 |
| SRR8749031 | Uninduced | 0.931 |
| SRR8749032 | Uninduced | 2.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.137 |
| SRR8400027 | Control - Root | 37.708 |