Gene detail

Gene detail information of Glyur000186s00009870

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28570.1	0	Long-chain fatty alcohol dehydrogenase family protein
NR	KHN02487.1	0	Long-chain-alcohol oxidase FAO2 [Glycine soja]
COG	YP_003397164.1	1.00E-48	glucose-methanol-choline oxidoreductase [Conexibacter woesei DSM 14684]
Swissprot	tr\|B5WWZ9\|FAO2_LOTJA	0	Long-chain-alcohol oxidase FAO2
trEMBL	tr\|I1N9S7\|I1N9S7_SOYBN	0	Long-chain-alcohol oxidase {ECO:0000256\|PIRNR:PIRNR028937}

Sequence

Transcript Sequence

>Glyur000186s00009870.1
GAAATTTTAATTGAGGCTATCCATATTACAAGTAGCCACTCAATCTCGTGCTTGTATTTTGTTTTGNCTATTAAAGGCACAGTTTGTAACAGCTGCTGCAACTCACAGAAGCATTAAAAACAATAGTAATTTAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGTATCATTCAGATTGCAGAGAGAAATGGAAGGAGGAGGAGAGATGTGTCATCCTCTATTGAGAGGAGGTAGGAGAAAAGAGAAAGGTTACAACCATGGATTTTCAACCAGCCAGATGCAAGNAATGGCTTCCATATGTGAGGCTCTGTTTCCTCCCCTGCCATTAAACAAAGAAACCTCAGAAGACAAAGTCCTCTCATCCTTCTACAGTGCTTCTGCTTCTCAGGTCCCATTTCCTGATGAGGCTGCAGAGCTGTTATTCAAGAGGGGTTTCTCAAAAGCTTTGGACTTGATTTGGGACACTGTTGCTCTGTGGAACCCTTTGCTTGCACTGGAAATTCCCTTGGAGAAGAGAGAAGAGATTCTCAAGAATTGGTCAAGGGAAAACCGTTGGATACCTCTACGGGTAGTGTTTGTGCTCATCAAACTTGTTTGCTTCTACAATTTGTTCTCAAGGACTGATGTAAATGGGCACAATCCCATGTGGAAAGCAATTGGGTACCAGGTGGACACCAGGGAAAAGTTGAGACAAAAGGAGAGGCCCCTCCAAGAGGGACTGATAGAGACTACATACGAAACTGATTCTACTTTAATCCAATCCCTCACTGAAAAAGGCCTTGAAGTCACTGAAGATATCAAATGTGATGTTGTCATTGTCGGTTCCGGTTGTGGTGGAGGAGTTGCTGCCGCAGTTCTTGCAAACTCTGGCCAGAAAGTGATAGTCCTAGAGAAAGGAGAGTATTTTGTTTCCCATGACTATTCTTCCCTGGAAGTTGGTGGAGGCTCTGCTGTAAACTGGTCTGCATGCATCAGAACACCCGATTCTGTTCTGAGGGAATGGTCTGAAAAATATAAAATCCCGCTTTTCGCAGGCTCGGGTTACCAATCTGCCATGGACTCGAAATGCGAGAAGGAAAGCTTTCAGAACCAAGTTCTTCGACAAGGCTGTGAGAGGATTGGTTTAGAAGTTGAGTCGGTTGCATTAAACTCTTCAGCAGATCATTATTGTGGTTCATGCTGTTATGGTTGTAGAACAGGAGATAAAAAGGGCACTGACTCTACCTGGTTGGTTGATTCTGTAGGCAATGGTGCAGTGATCCTCACTGGATGTAAAGCCGAGAAATTCATACTAGTGGAAGATGGAAAGAATGGAATGAGACAGAGAAAGAAATGCTTAGGAGTGATTGCTGCAGCAAGTTGTAGGAGTAATAATATAACAAAGAAACTCCGGATCGAATCGAAGGCAACCATTTCAGCATGTGGCTCCCTCTCCACGCCGCCTCTAATGATCTCTAGCGGTCTGCGAAATCCAAACATTGGAAGGAACCTCCATCTCCACCCTGCTCAATTTGCTTGGGGGTATTTCCCAGAAGACATGACAAACTTGAGTGGTACTAACTATGAGGGAGGAATCTTAACTTCGGATTCCACCCCGCGAATCATCATAGAAGCGCCTGCTCTAGGACCTGGATCATATTCAGCATTGGGATCAGGAGAAGTAAAGGGCGAAGGCAAAATTTCTTACAGACTTGACCAAGTGGACAAAGAAAACATTAGAATTGGATTGAGGAAGGCCTTAAGGATTTTGGTGGCAGCAGGAGCTGTAGAAGTGGGAACTTACAGGAGTGATGGCCAAAGAATCAAATGTAGAGGGATCAAGGAAGAAGATTTGGAGGAGTTTCTAGACACCGTCACGGTAGTTGGGGGTCCAGGTTCAAGGGGTGAACTCTGGACTGTATTTACTAGTGCACATCAGATGGCAAGTTGCAGAATGGGTGCCACTGAAGAAGAGGGTGCACTTGATGAGAATGGAGAGAGTTGGGAAGCAAAAGGCTTGTATGTGTGTGATGGAAGTGTTTTACCCACTGCTGTTGGTGTCAACCCCATGATAACCATCCAATCTACAGCATATTGTATTGCTAGCCAAATTGCAGAATCATTGGGGAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00186	146406	149448	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000186s00009870.1	PF00890.19	FAD_binding_2	207	243	2.20E-06
Glyur000186s00009870.1	PF00732.14	GMC_oxred_N	250	440	3.00E-49
Glyur000186s00009870.1	PF05199.8	GMC_oxred_C	497	630	2.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.790
SRR1783600	control	1.751
SRR1783602	moderate drought stress	6.012
SRR1811619	moderate drought stress	6.071

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.539
DRR006520	Root Summer glycyrrhizin high producing strain	2.482
DRR006521	Root Winter glycyrrhizin high producing strain	4.950
DRR006522	Root Winter glycyrrhizin high producing strain	4.751
DRR006523	Root Summer glycyrrhizin low producing strain	3.845
DRR006524	Root Summer glycyrrhizin low producing strain	3.864
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.057

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.260
SRR2868004	Drought Stress (root)	17.756
SRR2967015	Control (root)	29.027

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.798
SRR9715740	Leaf	15.854
SRR9715741	Leaf	10.570
SRR9715739	Root	3.114
SRR9715742	Root	6.408
SRR9715743	Root	5.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.698
SRR8749028	MeJA induced 9h	14.382
SRR8749029	MeJA induced 9h	7.228
SRR8749030	Uninduced	20.064
SRR8749031	Uninduced	29.366
SRR8749032	Uninduced	26.168

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.985
SRR8400027	Control - Root	10.131