Gene detail information of Glyur000186s00009869 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44070.1 | 1.00E-141 | phytochelatin synthase 1 (PCS1) |
| NR | KEH23949.1 | 0 | glutathione gamma-glutamylcysteinyltransferase [Medicago truncatula] |
| COG | YP_006413715.1 | 4.00E-10 | Phytochelatin synthase [Thiocystis violascens DSM 198] |
| Swissprot | tr|Q2QKL5|PCS3_LOTJA | 0 | Glutathione gamma-glutamylcysteinyltransferase 3 |
| trEMBL | tr|A0A072U2N3|A0A072U2N3_MEDTR | 0 | Glutathione gamma-glutamylcysteinyltransferase {ECO:0000313|EMBL:KEH23949.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00186 | 140395 | 144958 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000186s00009869.1 | PF05023.9 | Phytochelatin | 6 | 214 | 1.90E-87 |
| Glyur000186s00009869.1 | PF09328.5 | Phytochelatin_C | 220 | 483 | 4.00E-98 |
| Glyur000186s00009869.2 | PF05023.9 | Phytochelatin | 6 | 214 | 1.90E-87 |
| Glyur000186s00009869.2 | PF09328.5 | Phytochelatin_C | 220 | 483 | 3.90E-98 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.861 |
| SRR1783600 | control | 3.784 |
| SRR1783602 | moderate drought stress | 4.275 |
| SRR1811619 | moderate drought stress | 4.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.186 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.232 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.465 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.821 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.757 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.406 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.685 |
| SRR2868004 | Drought Stress (root) | 22.407 |
| SRR2967015 | Control (root) | 23.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.429 |
| SRR9715740 | Leaf | 11.042 |
| SRR9715741 | Leaf | 12.807 |
| SRR9715739 | Root | 4.017 |
| SRR9715742 | Root | 7.584 |
| SRR9715743 | Root | 6.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.018 |
| SRR8749028 | MeJA induced 9h | 11.678 |
| SRR8749029 | MeJA induced 9h | 8.952 |
| SRR8749030 | Uninduced | 10.611 |
| SRR8749031 | Uninduced | 6.008 |
| SRR8749032 | Uninduced | 8.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.026 |
| SRR8400027 | Control - Root | 11.131 |