Gene detail

Gene detail information of Glyur000186s00009857.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28530.1	2.00E-74	NAC domain containing protein 74
NR	XP_006604496.1	1.54E-167	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Glycine max]
Swissprot	tr\|Q84TE6\|NAC22_ARATH	3.00E-63	NAC domain-containing protein 21/22
trEMBL	tr\|K7MYQ1\|K7MYQ1_SOYBN	6.00E-168	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G34881.1}

Sequence

Transcript Sequence

>Glyur000186s00009857.1
ATTTCTTGTAACTTTAGTTTTTCTTGAAACTTCCTACTATAACTAACCATTTACACAAGCATGCCCCCAGCCCCAGGAATATTGTAGTGAGAAATATTAATTCAAATTAAAATGGCAAAGTACCTAGCTAGTCTAATTATTATCTTCCTAACTATATATATAAATACGCGGTACCAACCTTTCTTCTATACCTTAATATTAAGGAGTAACCCGATCTCCAAGCTTCAATTATATACATTATCCACATTCCTATAGCTAGCTTCATCCAACTCCTCCATCTACAAAATACGCATTAGATTTCTCTGTCTCTATCTTCTAATTAGTGTGTGTTTCATACATACATATATACACACATACATATCTTCAATCTCTCTCCTTTCCTTTCCTTTCAAATTATAACAGNAAAAAAGAAAAACCAAATGGGTCTGAGAGACATCGGTGCTTCACTGCCACCTGGGTTTCGGTTTTATCCAAGCGATGAGGAATTGGTGTGTCACTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTCAAGGGTACCCTTATTGAAATTGACCTCCACATATGCGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTTAATGCAACGGAATGGTACTTCTTCAGCTTCCGGGACCGCAAATATGCGACTGGGTTTAGAACCAACAGGGCCACCACAACTGGGTATTGGAAAGCAACGGGGAAGGATCGTATGGTGTTGGATCCAATCACGCAGGAGGTTGTAGGGATGAGGAAGACGTTGGTGTTCTATAGGAATAGGGCCCCCAATGGCATCAAAACCGGATGGATCATGCATGAATTCCGCTTGGAGACACCACACATGCCTCCTAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGACAACACTACTTCCAAACTCATGTATGAGACGACAACACCTCCATCCATAACTTTGGCGTCATCAATATCACCTCCAAACCAAACCATACCCAGTCCAGGTGGTTATAACAGACTTGATTCTTTCTCTTCCTCCATGACGAGTACCCTTCATCATCATTTCAACCCCAACCAACAAAACAATTCTTCTTCCATGAATAATAATAATAATAATCCCCTTCATCACTATTCTCGGGAAACACATGCAAACAATAGCACTGTTACTCAGATTAGTTCCAAATGTCATGATGATGGGTATGGATTCTTGTGGAACTTGGATTTGGAAGAAAATAGCTTAGAACTAGAAGATGGTGTGGCTTCAAACTTGGACGCCATAAGGTTCGAGGTTGATAATAATAATAATAATAATATGGTTTTACTATAAAGATATAATTAATATTATGTCATGTGTACATGTACATATATATATGGTTCTTAAAATTCGTTGATTTGTGATGTATTTATGNTGTGTTGCTTTGAAGTCGCATGCTAGATTGGAATTTCGTTGTTTNAAGATTGTGGTATATAGTTCAAGTAAGAGGAGTGTGGTCAATTAGGCTTTTCGTACAGCTTGTATTATATATCTTGGGAGTTAGGGCATTAATAATCCTTTGTATACCATTTGTCCATTTGTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00186	59417	64558	-

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000186s00009857.1	PF02365.10	NAM	10	138	5.90E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.393
SRR1783600	control	5.606
SRR1783602	moderate drought stress	3.995
SRR1811619	moderate drought stress	3.978

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.411
DRR006520	Root Summer glycyrrhizin high producing strain	33.102
DRR006521	Root Winter glycyrrhizin high producing strain	0.212
DRR006522	Root Winter glycyrrhizin high producing strain	0.138
DRR006523	Root Summer glycyrrhizin low producing strain	56.081
DRR006524	Root Summer glycyrrhizin low producing strain	56.329
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.176
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.176

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.356
SRR2868004	Drought Stress (root)	4.716
SRR2967015	Control (root)	5.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.083
SRR9715740	Leaf	0.642
SRR9715741	Leaf	0.856
SRR9715739	Root	0.796
SRR9715742	Root	9.640
SRR9715743	Root	7.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.043
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.061
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.097
SRR8400027	Control - Root	11.074