Gene detail information of Glyur000186s00009855.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08620.2 | 5.00E-147 | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
| NR | XP_004493785.1 | 0 | PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q53WJ1|JM703_ORYSJ | 0 | Lysine-specific demethylase JMJ703 |
| trEMBL | tr|K7MYQ0|K7MYQ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G34870.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00186 | 47510 | 53070 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000186s00009855.1 | PF02375.12 | JmjN | 101 | 134 | 1.30E-14 |
| Glyur000186s00009855.1 | PF02373.17 | JmjC | 350 | 463 | 1.60E-30 |
| Glyur000186s00009855.1 | PF02928.11 | zf-C5HC2 | 571 | 623 | 8.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.022 |
| SRR1783600 | control | 7.036 |
| SRR1783602 | moderate drought stress | 9.943 |
| SRR1811619 | moderate drought stress | 9.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.833 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.964 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.716 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.425 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.179 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.237 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.876 |
| SRR2868004 | Drought Stress (root) | 15.906 |
| SRR2967015 | Control (root) | 17.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.194 |
| SRR9715740 | Leaf | 11.343 |
| SRR9715741 | Leaf | 12.659 |
| SRR9715739 | Root | 1.122 |
| SRR9715742 | Root | 7.216 |
| SRR9715743 | Root | 4.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.328 |
| SRR8749028 | MeJA induced 9h | 15.919 |
| SRR8749029 | MeJA induced 9h | 9.928 |
| SRR8749030 | Uninduced | 14.955 |
| SRR8749031 | Uninduced | 10.237 |
| SRR8749032 | Uninduced | 9.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.716 |
| SRR8400027 | Control - Root | 20.738 |