Gene detail information of Glyur000186s00009854.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54690.1 | 6.00E-138 | Sugar isomerase (SIS) family protein |
| NR | XP_004493784.1 | 0 | PREDICTED: probable arabinose 5-phosphate isomerase-like [Cicer arietinum] |
| COG | YP_004650920.1 | 1.00E-106 | hypothetical protein PUV_01160 [Parachlamydia acanthamoebae UV-7] |
| Swissprot | tr|Q9M1T1|SETH3_ARATH | 0 | Probable arabinose 5-phosphate isomerase |
| trEMBL | tr|A0A072UDP6|A0A072UDP6_MEDTR | 0 | Arabinose 5-phosphate isomerase, putative {ECO:0000313|EMBL:KEH23935.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00186 | 45009 | 47043 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06041 | kdsD, kpsF | EC:5.3.1.13 | Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000186s00009854.1 | PF01380.17 | SIS | 59 | 187 | 3.20E-21 |
| Glyur000186s00009854.1 | PF00571.23 | CBS | 217 | 273 | 2.80E-05 |
| Glyur000186s00009854.1 | PF00571.23 | CBS | 285 | 340 | 9.50E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.804 |
| SRR1783600 | control | 42.244 |
| SRR1783602 | moderate drought stress | 24.103 |
| SRR1811619 | moderate drought stress | 23.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.478 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.374 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.165 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.239 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 27.706 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 28.804 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.639 |
| SRR2868004 | Drought Stress (root) | 13.599 |
| SRR2967015 | Control (root) | 15.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.725 |
| SRR9715740 | Leaf | 7.346 |
| SRR9715741 | Leaf | 10.005 |
| SRR9715739 | Root | 48.122 |
| SRR9715742 | Root | 32.322 |
| SRR9715743 | Root | 32.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.842 |
| SRR8749028 | MeJA induced 9h | 8.718 |
| SRR8749029 | MeJA induced 9h | 9.600 |
| SRR8749030 | Uninduced | 5.724 |
| SRR8749031 | Uninduced | 2.716 |
| SRR8749032 | Uninduced | 4.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.004 |
| SRR8400027 | Control - Root | 33.432 |