Gene detail

Gene detail information of Glyur000186s00009851

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54790.1	0	ARM repeat superfamily protein
NR	XP_006604491.1	0	PREDICTED: U-box domain-containing protein 3-like isoform X2 [Glycine max]
COG	YP_001957542.1	1.00E-11	hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q8GWV5\|PUB3_ARATH	0	U-box domain-containing protein 3
trEMBL	tr\|K7MYP7\|K7MYP7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G34820.2}

Sequence

Transcript Sequence

>Glyur000186s00009851.1
CTTTGTTGGGAAACACAGCCATGAATGAAAGAGGGAGGGAAGGCCTTCAGTGACCAATACCATTGCAATTTCAGAAGAAAAAAAACCACTTTGCTTTTGGAGACTTCCAATCTCATCATGGTTTGGAATTGATCTCGATCTGTTTCACCTGTGTTGCAGCGTTCGANTTTCAGAACCATGCATATAGGTCAAACAGATATAACTTCAGCGAAATGTCTTATCAACAGCATTTCTCGGTTCATTCATCTAGTTTCTTGCCGAACAGTGAAACCTATGCCGCTTCAGAAGAACTGTAATAATATGGTTGGTGTGTTGAAGTGTTTGAAACCAGTGCTTGATGATGTTGTGGATTGCCAAATCCCTTTGGATGAAAATCTGTATAAAGAATGTGAAGAATTGGATATGCAGGTCAATGAAGCTAGGGAGTTCATTGAAAAATGGGGCCCAAAGATGAGCAAGATTCACAGTGTTCTTCGTAGTGGGGAATTGTTGGTAAAGTTACAGAGCACTTCACTTAAGATTTGTGACATAATTGCTAGATCCCCAAAGTCACCTTCGTCTGTTTCAGTTTTGACTAATCTTCAGGAACTTCAGTGTCTTAAGAAGGAACCGGCAATGGTCTATATAGAAGAAGCACTGAGAAATCAAAGGGATAATATTGAACCTTGCTATGAAAATNTAAAGGAAATTTTAGAGTTACTTAAATTGACAACAAACCAGGAGCTGCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCNGAAGTCAATAAAACAAAAGGGGACTTAGATGAAAATAACCGAATTGTGAATCTTGTGTGCAGTTTACGAGATTATGCGATGAAAATTAAATGCCCTGAAGTCAAAAGTGGTGTCTCAGTCCCACCATACTTCCGGTGCCCCTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAAACATATGAGAGGCAGTCCATCCAAATGTGGCTCGATCATGGGCTGACTGTTTGTCCCAAGACTCATCAAAGACTTACCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGNAACTCTAAGCACAGTGATTCTGCCAACATTTCATCCCCCTCAGATGATTCATTGCATCAAGAGTTAGATCGTGTGTGTAGTTTTGGGTCTTCACATAGTAGCAATTCCAATTCAAAATCATCTCTTCAAACTGGAAATGCATTTGAGAAGCAAAAGGGTGATAACTCTTTCGGATTAAGTGGAGAATCCAATAGATNCCAGAGTGGCGACACGGAAAAGTTTGAGCAACAATCGCTTGCTCCTTCATGTAGTCACAGCAGAAGTGAATCATTTTCGAGTTCTATTTCTAGTAGTGATTATGTACTTCCAGTTTCAAAAGAGATGTCAGGGATATCTAATAATAAGCATCAAAGTGTGTTGTCTGGAGGAATTACTAATGGGTGTCCTGCTTCTCCTGCACATAAAGAATCAGAGATTTTTCCTTCATTATCAAGAGAGCAATTTGAAAGCCCTGGATCAAAAATTGGAAGGATGGAGAATGAAAATAAGTATAGTAAGAATAATAGTATTACTATTACTAGCCCTTCAAGAGTTGATACCCTTCCTGTTTCCAACTCAGGATCTGATAAATTGACCACCACATCTCATGTCAATAAGTTGATTGAAGATCTTCAGAGTCAATCAAATGAAATGCAAACTGCTGCTGCAGAAGAGTTGCGGCTCCTTTCCAAGTATAACATGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCTATCGTGCATTTACTTCCACTGCTATATTCAGACGTGAAGATAACACAAGAGCATGCCGTGACAGCTATACTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATTGAACCACTTATCCATGTTTTGCAGACAGGAAATGACAGTGCCAAGGAGAATTCTGCTGCAGCTATATTCAGCCTCTCCGTAATAGAAAACAATAAGCCAAAAATCGGTCGTTCTGGTGCAGTTAAAGCTCTGGTGGACCTTCTAGCCTCAGGAAAGCTTAGGGGGAAGAAGGATGCTGCAACTGCTTTATATAACCTATCAGTATTTCATGAGAATAAAGCTCGCATGGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCTGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGTCGATTAGAAATTGTAAGGGAAGGGGGCATCCCCTTACTGGTTGAACTTGTTGAATCAGNTTCTCCAAGAGGAAAGGAAAACGCGGCATCCATTCTCTTGCAAATATGCCTTCATAGTCACAAGTTTTGTACCATGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACAACAAGAGCAAGGGAAAAGGTANGGAGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00186	19841	23943	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000186s00009851.1	PF04564.10	U-box	237	308	2.10E-23
Glyur000186s00009851.1	PF00514.18	Arm	541	578	7.50E-06
Glyur000186s00009851.1	PF00514.18	Arm	580	619	7.00E-06
Glyur000186s00009851.1	PF00514.18	Arm	624	660	1.50E-06
Glyur000186s00009851.1	PF00514.18	Arm	704	741	0.0001

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.078
SRR1783600	control	7.099
SRR1783602	moderate drought stress	5.672
SRR1811619	moderate drought stress	5.547

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.930
DRR006520	Root Summer glycyrrhizin high producing strain	11.057
DRR006521	Root Winter glycyrrhizin high producing strain	7.166
DRR006522	Root Winter glycyrrhizin high producing strain	7.005
DRR006523	Root Summer glycyrrhizin low producing strain	14.187
DRR006524	Root Summer glycyrrhizin low producing strain	13.957
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.201
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.230

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.956
SRR2868004	Drought Stress (root)	9.938
SRR2967015	Control (root)	12.937

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.515
SRR9715740	Leaf	4.894
SRR9715741	Leaf	6.273
SRR9715739	Root	1.190
SRR9715742	Root	4.996
SRR9715743	Root	4.766

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.265
SRR8749028	MeJA induced 9h	4.485
SRR8749029	MeJA induced 9h	1.760
SRR8749030	Uninduced	1.688
SRR8749031	Uninduced	1.665
SRR8749032	Uninduced	1.664

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.630
SRR8400027	Control - Root	21.136