Gene detail

Gene detail information of Glyur000185s00016471

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66840.1	2.00E-53	Plant protein of unknown function (DUF827)
NR	XP_004492966.1	0	PREDICTED: protein PLASTID MOVEMENT IMPAIRED 2-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9C9N6\|PMI2_ARATH	1.00E-85	Protein PLASTID MOVEMENT IMPAIRED 2
trEMBL	tr\|K7K781\|K7K781_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G09801.1}

Sequence

Transcript Sequence

>Glyur000185s00016471.1
TCGGGACTCCCTCCCCTCTTCTTGTTACATTACATACCATCTTGTTTTCCCATTTGAACTTGGAATTCTCAACCACAAACTTTCACCTCAAAATTTGTTTTTTCAGCTAATCAACCACTCTCCAAGGCACAGTCTCAGAANCCTCCTTCAAGAACAAGAGAACTCCATAGAGCAAGAAGGGATATTGGAAGGTACAGAGAGAACAGATGGACAGCAGAATCAGCAAAAGCTCAAGCAGAATCTGAGCTNTCAAATGCAAGAAAGACAGTGAANCATCTTTCTTCCATGATTGAGGAATCAAGTTACAAGGCAAAGGCAAGAATGAGGGACATAGAAACACTAGAGAAGAAGGGAAAGCACCAACAACAACAACATGGGGCAATGATGGTTGTAAGTAGGAATGAGAATCATGAGTATGCACAAGTGATGAGAGAATTGGAATATCTCAAAAAGGAACTGTTCAAGCTAAAGCTTGATGTGGCTTCTGTGTTGGAAGAGAAATCAAGGGCAGAGAAAGAAATCGAGGAATCGAGCTCGAAGATGATCACTTGTTCAAGGACTGCAGAAGTGCTTAGAAAGGAGATTGAGGAAGCCAATGAAGAACAAGTACTTGCTGAACTTGCCAGGATTGAGGCTTTGAAAGAATTGGAAGATGTCAAATCCCAGAGAGAAAAGGAAGCAAGTGAACTCTCATGCAAATTGGAAAGCACAAGGAAAATGTTGGAGGAAGCCAAGGGAGAGATAGATGAGTCAAAGGAGCTTGAAATGAAGTTAGCTCTAACAATAGCAGATGTTGATCTCTTGCAGAATGAGTTGAAGTCAGTTAAAGAAATGGAGAATAAAAGTGTTCAAGGAGATGAGGAATATTCAGGAGACTCAACTATGNTACAGGCTATAAAAGAAGAACTTGAGGCAGCAAAGAAGGAACTGGCTTTGGTTAGAGAAGAAGGTTTTCAGTTTATGGCCTCTATGGATGTTATAAGGAATGAGCTGAAGCATGTAANACATGAGACAGCTCTCTTGAAGAAGAAAGAAGGGAAAGCTGATTCAGCAGTTCAGAATCTCAATTCCAAGCTTCTGAGAGCAAAATCTAAGCTAGAAGCTGTAACTGCTGCAGAGGAAAAGGCCACATCTATAGCCATGAGTCTATCTCATGCACTTGATAACCTGAAAACAGAAACAGATGCAGNTGAAAAGGATAAGGAACATGTAACTCAAGACATCATAAACACTAAGGCAGAGATAGAGAAAACTGAGTTTGAGATAGACATGACTGAGGAAAGATTGCAAGGTGTCATGGAAGAGCTAGAAGCAGCAAAAACATCTGAAGCTTTAGCTTTGGAGAAGCTTAAGACACTTACTGAGACTACCATGAGAGAAAGGGCTTTAACAGCAAAGCATAGCTCCTCGATTACCATCTCAAAATTTGAATACGAGTATCTAACTAATCATGCAGCCGCGGCGGAAGAAATTGCTGATAAGAAAGTTGCAGCAGCTCAGGCATGGATTGAAGCTCTCAAAGCCAGTGAGAAGGAAATACTAATGGAAACAAAAATAGCTCATAGGGAACTCAAAGAAACAATGTTGAAGGAAGAGAGGGAGGCTTACNCTAAAGAGAAGATGCTTGCAAGAAGAGTTAGTAGTGAGGAGTTTGAGAATTGGCCAAGAAAACGTGAGAAGAGTTCATCTAAGAACTTCCAAAGAGCTTTCTCTAGAAAGAGCATCAAGTTATCCAATGGAAGTAGAACTCCTGCTAATAAGAGAGCTAAGTTTCAAAAGTCCGATTCGCCCGCGGCTCGCCATGTTAGTCCTTTCACTCTCAAGAAGAGAAAGAAGGTAATCCCAAATTTGGCAAAGCTTTTCAGTGGCAAGAAAATCAATAGGACTAAATAGTGACANCATTGAGAAAAGATGATAATGATANTAGAACTTCANCACTCAGCAGGGCCAAGGGAAGAGTGTGATGTGAAACAAACATGTCTATTGTTGAGGCTCTAATGTTATATTTTACANCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00185	209430	212230	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000185s00016471.1	PF05701.6	WEMBL	8	432	2.00E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.284
SRR1783600	control	1.333
SRR1783602	moderate drought stress	0.799
SRR1811619	moderate drought stress	0.756

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.560
DRR006520	Root Summer glycyrrhizin high producing strain	0.631
DRR006521	Root Winter glycyrrhizin high producing strain	31.013
DRR006522	Root Winter glycyrrhizin high producing strain	30.143
DRR006523	Root Summer glycyrrhizin low producing strain	0.109
DRR006524	Root Summer glycyrrhizin low producing strain	0.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.080
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.354

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.705
SRR2868004	Drought Stress (root)	0.806
SRR2967015	Control (root)	0.584

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.866
SRR9715740	Leaf	40.094
SRR9715741	Leaf	20.449
SRR9715739	Root	0.001
SRR9715742	Root	0.034
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.074
SRR8749029	MeJA induced 9h	0.093
SRR8749030	Uninduced	0.016
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.215
SRR8400027	Control - Root	0.220