Gene detail

Gene detail information of Glyur000185s00016463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66880.1	1.00E-123	Protein kinase superfamily protein
NR	XP_006603050.1	0	PREDICTED: probable serine/threonine-protein kinase At1g18390-like isoform X1 [Glycine max]
COG	YP_002763346.1	9.00E-24	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|P0C5E2\|Y1839_ARATH	2.00E-150	Probable serine/threonine-protein kinase At1g18390 (Precursor)
trEMBL	tr\|K7MVH1\|K7MVH1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G53220.2}

Sequence

Transcript Sequence

>Glyur000185s00016463.1
ATGGCTTCCCTGCTTATACTTATCTTCCCTCCTATCCTCTTGATTCTGATTCAGTTACCTTCATATTGGAGCTCCAACGTTTATTATAGAGGTTGTGATATTATGTTCAGTTGTGGGGATATAAAGAACATTGGTTTTCCATTCTGGGGAGAGAATCGCCCAAATGGGTGTGGCCACCCTCAGTTGCATCTCACATGCCAAAACAACAAGAGCAGCTACATAACAATCAATGAAGTCAAGTATCAAGTTTTGGAGGCCAACCCTGATGAACACACTTTGAGAATCACAAGAGAGGACTACTTGCAANAAGGACTATGCCCATCAAAACATGTCAACACAACCTTAGACACTGAGGTCCTTGTTTATGCAACTAGTGACTANANNAANCTTACCCTCTTCTATGGTTGTGATNCTTCAATTTCAAATGCTTTCCCNTCCCTTCCTTGTCTCCCAAATGGGGCTTCTGATGAACATGTTTATCCTTGGCTTGGTGGGACTATTGATCTTCCTCCAGCTGTGTCATGCAAAACAAGTGTGTTTGTTCCCCTTTCTTATCAGTTATCAACAATTGATGTCAATGATTTCAACAAGACACAAGGGGCAATCAGAGATGGATTTGTGGTGAGATGGATGGTGGGTATTGCAGAATGTGACAAGTGTCAGAAATCAGGTGGAGTCTGTGGTTATAACTTGACTTNAAATCAACCAACCTGCTACTGCAGTGATCCATCTTGTTCTGATTTGGTACCAGATGCCACTCAGGAGCCTCCACCTCCAGGTAAGGGCAGTTCTAACAAAACAGGAGTTGTAATAGGCGCTGTTGCAGGAGTTGCAGCCCTTGTTGGCATTCTTGGNTGTGTGTGTTTTGTGATGCGACGAAAGAGAAAGAAAGCTGAGAAATCAAGAAGCNTGGACCTCTTCATGCCTCCTCCTCCAAGCAGTAGTGACACTCTTACCTCTACTACTAATATGTCTCAGAGTATTCCTTCTTATCCCTCTTCCAAGTCTGCTGACACGGTGCAGCAGAGGAGTTTCTACTTTGGTGTCCAAGTGTTTACCTATGCTGAACTAGAGGAAGCTACCAACAATTTCCACACTTCTAAAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAANGTAAAGCGCCATTATGAAAGCAATTTCAAACGTGTGGAGCAGTTCATGAATGAAGTTGAGATTCTAGCCCGCTTAAGGCATAAGAACCTGGTGACACTCTATGGATGCACCTCTAGACATAGCAGAGAACTTCTCCTTGTATATGAATTCATACCAAATGGAACAGTTGCTGATCATCTTCATGGGACACGTTCAAAATCCACTTTACTCCCTTGGTCTGTAAGGTTGAACATTGCATTAGAAACAGCTGAGGCACTAGCTTACCTCCATGCATCGGATGTCATACACCGCGATGTTAAGTCCAACAACATCCTCCTAGATGAGAAATTCCACGTTAAAGTTGCTGATTTTGGTCTCTCAAGGTTGTTCCCTAACCATGTCACACATGTCTCAACTGCCCCACAAGGAACACCTGGTTATGTTGATCCTGAGTATTATCAGTGCTACCAACTCACCGATAAGAGTGATGTTTATAGCTTTGGTGTTGTCTTAGCTGAGCTCATTTCATCGTTGCAAGCCGTGGACATCAGCAGGCACCGCAATGATGTGAACTTGGCTAACATGGCTGTTAGTAAAATTCAGAACCAAGAATTGCATGAGTTGGTTGATCCATTTCTTGGATTTGAAAAGGATCATGCTGTGAGGAGGATGACAACAGCAANGGCTGAATTGGCTTTTAGGTGTTTGCAGCAGCAGAGAGACATGAGACCCACAATGGATGAGGTGTTGGAGATCTTGAGAGGAATCAAGAGTGATGAGCTTGACACAAGTGAAGCAGNAAAAGTAGTGGATGTTGTTAGGACTGATGAACTTGTGCTTTTGAAGAAGAAGGATCCTAATTCCCCGGTTTCACCAGATTCAGTTGCTGATAAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00185	152325	165352	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000185s00016463.1	PF13947.1	GUB_WAK_bind	37	137	1.30E-07
Glyur000185s00016463.1	PF14380.1	WAK_assoc	173	242	1.50E-14
Glyur000185s00016463.1	PF00069.20	Pkinase	365	624	1.50E-45

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.053
SRR1783600	control	3.026
SRR1783602	moderate drought stress	3.239
SRR1811619	moderate drought stress	3.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.420
DRR006520	Root Summer glycyrrhizin high producing strain	0.381
DRR006521	Root Winter glycyrrhizin high producing strain	0.406
DRR006522	Root Winter glycyrrhizin high producing strain	0.396
DRR006523	Root Summer glycyrrhizin low producing strain	0.766
DRR006524	Root Summer glycyrrhizin low producing strain	0.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.638
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.567

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.114
SRR2868004	Drought Stress (root)	41.230
SRR2967015	Control (root)	25.121

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.293
SRR9715740	Leaf	8.675
SRR9715741	Leaf	32.377
SRR9715739	Root	4.106
SRR9715742	Root	6.523
SRR9715743	Root	7.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.349
SRR8749028	MeJA induced 9h	57.182
SRR8749029	MeJA induced 9h	59.399
SRR8749030	Uninduced	101.505
SRR8749031	Uninduced	207.191
SRR8749032	Uninduced	127.370

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.589
SRR8400027	Control - Root	17.010