Gene detail

Gene detail information of Glyur000185s00016445

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11040.1	3.00E-11	TRS120
NR	XP_007161157.1	4.10E-16	hypothetical protein PHAVU_001G047300g [Phaseolus vulgaris]
Swissprot	tr\|Q9FY61\|TR120_ARATH	3.00E-12	Trafficking protein particle complex II-specific subunit 120 homolog {ECO:0000305}
trEMBL	tr\|K7M683\|K7M683_SOYBN	1.00E-16	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G13520.1}

Sequence

Transcript Sequence

>Glyur000185s00016445.1
ATGGGTGAGGACCTTGAGCTGCTTCATTTCAATCGCAAAACCCTCGTCGTCGGCATTGTCCACTGCCCTTCCTCGCCAGATCTCGACGAGGATCTCAACGCCATCGTCGATCAATTCTCCACCGCCTGCAGGTCTTACCCTTCCTCCCTCGTCGATTGCTGCTTCGCCTTCTGCCCCAACGATTCCAGGTTATCAAGGCCAAAAAGAGGAGACTTGGGCGTGCGCAGAAGACCATTGGTGATTACTGCTTGCTGGCGGGTTCTCCTGTTGATGCCAATGCACATTATTCTCTCCCTCCGAGAGGCTGCACCAAAAACCAACTGGTATGCTGGAGCATTGGAGGGTAGCGTCTGTGCCTTGCTGAGAACACAAGTGGCATTTTTGCTGCTGTATGGAAAACTTGAAATAGCAATTCTGCATAGAGGAAATGAAGCACAAGCAGATGTACATCCTGAGAATACAAGGCGGGCTTTGGAGGATATGGCACTGACTGAAGTGGTTCTTGTAGCATCTCTATTACTTTACTCATTGGTGGCCTATCCCATGGATTCATTTGAATGCACCATAGACTCACCATAGTAATCTTCCTTACCATATAATTTTCTTCCTCCGACATTGCCAAACAGTTTACAGGAGTATGACCTTGCTCAAGATTCCTATAAATCCAGTCTGGAAAGTACATTTCAGTGGTATGTGACCCTCCACTATCATGATTCTTTCTTCCTCCAATCATTTCAAGAATCAGCATGCCATAACTGTATACATTAGACCTGTGAGAAACTCCACCATATGTTCAGCTAAATACTTCTAGTGCTATGTACCCTATAGTTCCTCTTGTTCCTTGCATGGATACAATACTCTCCTTTTGGCATATTTTAGCCAATCCAAAATCAGAGATTTTGGGGCAAAAATCTTCATCCAAAAGAATGTTTTGGGGTTTGATATCGAGATGCAAAATCCTTGAAGTACATCCGTGATGCAAGTATTCTAGTCCTTGAGCAATGCCAATTGCAATTTTGAACAATGTGTCCCAATCCAAATTACAAATAGCACTTGGGAACCCACCTCTATAGATGAACTTATCCAATGATCCATTGGGCATGAATTCATATATTAGTACTCTTTTGTTCATCTCATAACAAAAACCCAAAAGTGAGACAATGTTCACATGTGATGTTCTGCGAATGCTAGCAACTTCATTTATGAACTCTTCACCATTTCCCTTGGACTCACTTATTACTTTCACTGCTACATGACGACCATCAGGTAGGTTTGCTTTGTACACAACACCATATCCTCCTTGACCTAACTTATCATGAAATGAGTTTGTGATTCTTTTAACTTCTGCATAACAATATCGCTTTGGCACCGACAAATTATAACTCTGCATGAAATCCTCCACGTTCTGATCAACAAATTTTCTTCCTTTTCTGAAAATCATCTGTTGTTCGAAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00185	39880	43840	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000185s00016445.1	PF08626.6	TRAPPC9-Trs120	11	64	2.70E-06
Glyur000185s00016445.2	PF08626.6	TRAPPC9-Trs120	51	84	2.10E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.939
SRR1783600	control	7.059
SRR1783602	moderate drought stress	1.453
SRR1811619	moderate drought stress	0.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.971
DRR006520	Root Summer glycyrrhizin high producing strain	4.055
DRR006521	Root Winter glycyrrhizin high producing strain	1.410
DRR006522	Root Winter glycyrrhizin high producing strain	0.855
DRR006523	Root Summer glycyrrhizin low producing strain	1.542
DRR006524	Root Summer glycyrrhizin low producing strain	1.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.232
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.499

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.040
SRR2868004	Drought Stress (root)	0.056
SRR2967015	Control (root)	0.030

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.505
SRR9715740	Leaf	3.148
SRR9715741	Leaf	2.428
SRR9715739	Root	2.760
SRR9715742	Root	4.435
SRR9715743	Root	4.757

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.292
SRR8749028	MeJA induced 9h	0.092
SRR8749029	MeJA induced 9h	0.051
SRR8749030	Uninduced	0.230
SRR8749031	Uninduced	0.118
SRR8749032	Uninduced	0.015

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.995
SRR8400027	Control - Root	4.322