Gene detail

Gene detail information of Glyur000185s00016443

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38280.1	1.00E-113	PR5-like receptor kinase
NR	AES80551.2	0	receptor-like kinase, putative [Medicago truncatula]
COG	YP_001958461.1	7.00E-26	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P43298\|TMK1_ARATH	1.00E-127	Probable receptor protein kinase TMK1 (Precursor)
trEMBL	tr\|G7KUA1\|G7KUA1_MEDTR	0	Receptor-like kinase, putative {ECO:0000313\|EMBL:AES80551.2}

Sequence

Transcript Sequence

>Glyur000185s00016443.1
ATGTACACACAATTAGACTCAACCCGTGTTTCTCGTTTCTTGTTCATCTTCATCTCAGCCCTCTCCTCCACCAGCATTGCCGATGAGGCCGACGACGCATCCTACATGTCTGATCTTTTGAAAGCCCTGAGCCCAATACCCCCGGGGTGGTCTCAGAACACCCACCACTGCCAATGGAGCGGCGTCAATTGCAGTCAACACCCCAGTGGCGGTGGCCCTCTAGTCAAAGCCATCTTGCTCCCGTCAAGCTCACTCAGCGGGGAACTCCCCACATTGGACGGGCTCTCCCTCTCCTATCTCACCCACCTCGATCTCCACAACAATTCCCTCACTGGTCCCATTCCCTCTCTGGCCTACCTCAGTTCCCTTGAAACTGTGTACGTCGGCCACAACAACTTCACCTCCATCCCGTACAACTGCTTCCAGGGGCTAACAGCCTTGCAGACCGTCAACCTCAGCAACAACTCTCATCTCACGGAATGGCCTTTTCCCATTGCGCTGGCTCAGTCCCCGTCGCTGCACACCCTCGATCTCGCAGCAACAAATGTCGCCGGTGAGTTGCCAGCGGGTATATTTGACTGGTTCCCGAGTCTGCAGAGTGTTGTCCTTTCCTCCAACGACATCAGTGGGAGTCTTCCTGAGTGTCCTGGGAGATTCAGATCTCGAATAAGGCATTTGCGGCTCAACGATAACCAATTCACGGGTCCAATTCCTGACCTGTCAAACTGCACCGACTTGTCCGATCTACAACTTGGACTTAATAAGTTAACTGGTTTGGTTCCACCTTCGTTGATGGCTCTCCCCAGCTTGCAGAATGTTGCTCTGGACGACAATTATCTTCAAGGTCCGATACCTGTGTTTTCTCGCAAGGATGTGAAGGCAACTTGGAAAGGGAATAACTTTTGTCGAAACGATTCCGGTCCTTGCGATCCGCGGGTGACGACTTTGCTTGAAATTGCTGCAGCTTTTGGGTATCCCTTTATGTTGGCAGTTTCATGGAAAGGGAACAATCCTTGTGAAAAAGGAAGCGACTGGCGTTTCGTTATTGTGTGTAAAGGAGGGGAGATTGTTACATTTGATATCGGGCAGCGGAATTATAGTGGAACCATCTCCCCTGCATTTGCCAATTTAACTAGTTTACGGAATTTGACGCTCAGTGGTAATAATTTAACGGGTACAATACCTCAGAGCTTGACATCCTTGTCTCAACTCGAGCTTCTCGATGTGTCCAATAATGACCTCTCTGGAGAGGTTCCCCATTTTTCACCCAAGGTGAAGTTAAATACAGCGGGTAATGCTAATTTGGTTTTTCGAGGAGACAGAGATCCATCACCTGCACCTGTTTGGATAGCAGTGGCATCAGTGTTGAGTGCTGGAGTTGTAATACTTATTGTTATTATCGTCAAACGTAAGAGGTATTTTAACTTAGTACAAGAGAGGATTTTCAAGAAAGGAAGAAAATTTGTTGACCACAACGTGGAGGCGTTCATACGAAGTTATAAGCTATCGATGCCAAAGCAATATAGTTATGCAGAAGTTAAAAGGATCACAAACTCATTTCGTGATAAGTTGGGTCAAGGAGGATACGGTGTTGTGTACAAAGCAAACTTACCTGATGGTCGTCATGTGGCAGTGAAAATAATAAGTGAGTCCAAGGGAAATGGTGAAGAATTCATAAATGAAGTTGCTAGCATTAGCAAAACATCACATGTGAACATTGTCTCACTTTTGGGTTTTTGTTATGAGATGAACAAAAGAGCACTAATATATGAATTCATGCCCAATGGATCATTGGATCAGTTCATCTATAGAGGTGGGTTCACAAGTGCTATTTGTAATTTGGATTGGAACACATTGTTCCAAATTGCAATTGGCATTGCTCGAGGTCTAGAATACTTGCATCAAGGATGTACTTCAAGGATTTTGCATCTCGATATCAAACCCCAAAACATTCTTTTGGATGAAGATTTTTGCCCCAAAATCTCTGATTTTGGATTGGCTAAAATATGTCAAAAGAAGGAGAGTATTGTATCCATGCAAGGAACAAGAGGAACTATAGGGTACATAGCACCAGAAGTATTTAGTCGAACATATGGTGGAGTTTCTCACAAGTCTGATGTATACAGTTATGGCATGCTGATTCTTGAAATGATTGGAGGAAGAAAGAATCATGATAGTGGAGGGTCACATACCACTGAAATGTATTTTCCAGACTGGATTTATAGGGATCTTGAGGAAGGTCATACTCCTGTAAACTGTTTGGCAATGTCGGAGGAAGAAAATGATATGGTAAGGAAAATTACTATGGTGAGTCTATGGTGCATTCAAATGAATCCGTTGGATAGGCCACCAATGAGTAAAGTAATAGAGATGCTACAAGGACCACTTCAGTTAGTGCCATATCCTCCAAAGCCCACCTTGAATTCTCCTGAAAGACCATCATTACAAATTTCATATGCGTCATCCAGCAATTTGTTCGATACAAATTCAACGACCTTAGAGGAGAATGATTCCATAAAATCAAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00185	17843	21649	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000185s00016443.1	PF13855.1	LRR_8	99	156	3.90E-11
Glyur000185s00016443.1	PF00560.28	LRR_1	223	243	0.91
Glyur000185s00016443.1	PF13855.1	LRR_8	365	414	5.40E-07
Glyur000185s00016443.1	PF00069.20	Pkinase	522	788	3.00E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.158
SRR1783600	control	4.293
SRR1783602	moderate drought stress	0.581
SRR1811619	moderate drought stress	0.572

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.912
DRR006520	Root Summer glycyrrhizin high producing strain	2.027
DRR006521	Root Winter glycyrrhizin high producing strain	0.015
DRR006522	Root Winter glycyrrhizin high producing strain	0.011
DRR006523	Root Summer glycyrrhizin low producing strain	1.843
DRR006524	Root Summer glycyrrhizin low producing strain	1.512
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.694
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.326
SRR2868004	Drought Stress (root)	0.582
SRR2967015	Control (root)	0.500

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.958
SRR9715740	Leaf	2.368
SRR9715741	Leaf	7.626
SRR9715739	Root	11.063
SRR9715742	Root	53.873
SRR9715743	Root	47.182

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.156
SRR8749028	MeJA induced 9h	0.091
SRR8749029	MeJA induced 9h	0.092
SRR8749030	Uninduced	0.102
SRR8749031	Uninduced	0.033
SRR8749032	Uninduced	0.063

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.579
SRR8400027	Control - Root	7.060