Gene detail information of Glyur000185s00016438 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23750.1 | 2.00E-78 | Leucine-rich repeat protein kinase family protein |
| NR | XP_006601886.1 | 1.11E-133 | PREDICTED: probable receptor protein kinase TMK1-like [Glycine max] |
| COG | YP_004775215.1 | 2.00E-23 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|P43298|TMK1_ARATH | 3.00E-78 | Probable receptor protein kinase TMK1 (Precursor) |
| trEMBL | tr|I1MYB2|I1MYB2_SOYBN | 4.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00185 | 777 | 2195 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000185s00016438.1 | PF08263.7 | LRRNT_2 | 42 | 68 | 0.0014 |
| Glyur000185s00016438.1 | PF13855.1 | LRR_8 | 102 | 158 | 1.00E-09 |
| Glyur000185s00016438.1 | PF00560.28 | LRR_1 | 199 | 219 | 0.71 |
| Glyur000185s00016438.1 | PF00560.28 | LRR_1 | 223 | 243 | 0.64 |
| Glyur000185s00016438.1 | PF08263.7 | LRRNT_2 | 313 | 350 | 0.28 |
| Glyur000185s00016438.1 | PF13855.1 | LRR_8 | 370 | 413 | 7.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.090 |
| SRR1783600 | control | 0.111 |
| SRR1783602 | moderate drought stress | 0.107 |
| SRR1811619 | moderate drought stress | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.597 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.234 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.490 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.284 |
| SRR9715740 | Leaf | 1.366 |
| SRR9715741 | Leaf | 4.042 |
| SRR9715739 | Root | 3.472 |
| SRR9715742 | Root | 17.793 |
| SRR9715743 | Root | 14.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.445 |
| SRR8400027 | Control - Root | 2.046 |