Gene detail

Gene detail information of Glyur000184s00008208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45850.2	2.00E-49	AT hook motif DNA-binding family protein
NR	XP_003528860.1	5.27E-169	PREDICTED: uncharacterized protein LOC100799791 isoform X1 [Glycine max]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	5.00E-07	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|I1KIC5\|I1KIC5_SOYBN	2.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G07870.1}

Sequence

Transcript Sequence

>Glyur000184s00008208.1
CATTGATCTAGCTTCTACCTTTTGATTGTCCTTTTGCATGTATTGGTTGCCTTTGATTCTGTCTTGGCCCTCTTGGGATCCTTTTCTCTTCCTTTTGCTTTGCACATATAGTTATCAAACCTTCATGTGTATTTTTCAGAATGGTTCCATTTCTGATTTATAGTACTTGTGGTTGCTCTTGTCAAACTACAGTTATTGTTGATATAATTTAAGCACTTCTTGACACTCCTTTCTCAGTGACTGCACATTGGATTTCATTGATTTTATGGTTTTCTGATCTGTGCATTTTGTTCTTTGTCCACAAAATTTGTGATTGATTGTACATGAGAACAGAGCTAGGTGGTAAACTTTGGCAAATTGAATATCGGGAAAGTGTGGGGGTGTCAAAATTTATTGTGGAAGATTCTGAAGGAACTTGAAGTAAATGCATGGACATGGATCGCGGGGACCATTTATCTGGGTCTGCATCTTACTATATGCAGAGAGGAATTCCTGGTTCTGGAAACCAACCGGAATTGCATAATTCGCCCGGTATGCGTCCGATGTCTAATCCTAATCTACCGTTTCAATCAAGCATTGGGGGTGGTACCATTGGATCCGCATTGCCATTAGATTCCTCAGGAATCTCATCTCAATGTGTCAATGTGGGTGCTCCTTCTGGGGCTGCCACTGGAGAGCCTATCAAAAGGAAGCGAGGAAGGCCTCGAAAATATGGGCCTGATGGAACTGTGTCATTGGCATTGACTCCAACACCAGCTACTCATCCTGGAACAACCTTGACACAAGGCCACAAACGCGGTAGAGGCCGCCCGCCTGGCTCTGGGAAGAAACAACAGCTGGCTTCTCTAGGTCGATTGATGTCTGGTACAGCTGGGAATGGTTTCACTCCTCATGTCATCGCCATTGCAATTGGAGAAGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGTGTTATGTCAGCCAGTGGTGCTGTCTCTACNGGGCGTTTTGAGATACTGTGCCTGTCAGGCTCTTACCTGCCTGCTGGTAGTGATGGGTTCCGCAATCGAACTGGTGGATTAAGTGTTTCCCTTGCGAGTCCTGATGGCCGTGTCGTTGGTGGGGGAGTTGGTGGAGTGCTTATCGCAGCAAGTCCGGTTCAGGTTATACTTGGGAGCTTTATGTGGGGTGGATCAAAGACAAAGAACAAGAAAACAGAAGATTCTGAAGGTGCAGAAGTTGCTATGGAGCCAGATCACCAAGCAGTTCATAATCCAGTCGCGGTGAATAGCATTCCCCCAAATCAAAATCTTACTCCAACCTCACCTCTAAGTCCTTGGCCTGCATCGCGACCATTGGACATGCGTAATTCCCATATTGACATCGATTTAATGCGCGGGTGACAAATTTTATTTAGCACACACCGGTACTTTAATTGGTATATATTTCAGATTTCAGATTCATGGTCACTCATCTAATTTTCCTGTAGTAGCTAGTAATGACAGAATGGGAAAGTGCCAACAATAGAGTAGAAGCTAGCTCTGACTTTTGGAATATGATAAATGTCACCTATCCAACCATGATTGACTTTAGGGGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00184	236340	240729	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000184s00008208.1	PF03479.10	DUF296	152	190	2.00E-09
Glyur000184s00008208.1	PF03479.10	DUF296	191	252	2.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.826
SRR1783600	control	11.259
SRR1783602	moderate drought stress	7.811
SRR1811619	moderate drought stress	8.159

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.220
DRR006520	Root Summer glycyrrhizin high producing strain	12.570
DRR006521	Root Winter glycyrrhizin high producing strain	10.091
DRR006522	Root Winter glycyrrhizin high producing strain	9.553
DRR006523	Root Summer glycyrrhizin low producing strain	16.325
DRR006524	Root Summer glycyrrhizin low producing strain	16.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.097

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.406
SRR2868004	Drought Stress (root)	6.142
SRR2967015	Control (root)	6.882

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.633
SRR9715740	Leaf	73.866
SRR9715741	Leaf	60.661
SRR9715739	Root	7.624
SRR9715742	Root	11.479
SRR9715743	Root	9.624

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.851
SRR8749028	MeJA induced 9h	3.948
SRR8749029	MeJA induced 9h	5.228
SRR8749030	Uninduced	1.907
SRR8749031	Uninduced	0.785
SRR8749032	Uninduced	1.804

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.598
SRR8400027	Control - Root	21.153