Gene detail information of Glyur000184s00008195 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G45820.1 | 6.00E-32 | Remorin family protein |
| NR | XP_004510806.1 | 7.55E-94 | PREDICTED: remorin-like [Cicer arietinum] |
| Swissprot | tr|P93788|REMO_SOLTU | 1.00E-69 | Remorin |
| trEMBL | tr|T2DM60|T2DM60_PHAVU | 1.00E-88 | Uncharacterized protein {ECO:0000313|EMBL:ESW07032.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00184 | 168074 | 173332 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000184s00008195.1 | PF03766.8 | Remorin_N | 33 | 80 | 4.20E-11 |
| Glyur000184s00008195.1 | PF03763.8 | Remorin_C | 82 | 190 | 1.60E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.946 |
| SRR1783600 | control | 26.795 |
| SRR1783602 | moderate drought stress | 35.557 |
| SRR1811619 | moderate drought stress | 35.432 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 74.159 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 73.486 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 265.976 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 260.061 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 184.500 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 183.609 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 132.613 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 130.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 54.204 |
| SRR2868004 | Drought Stress (root) | 30.245 |
| SRR2967015 | Control (root) | 48.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 353.976 |
| SRR9715740 | Leaf | 289.721 |
| SRR9715741 | Leaf | 250.833 |
| SRR9715739 | Root | 53.575 |
| SRR9715742 | Root | 145.557 |
| SRR9715743 | Root | 119.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.180 |
| SRR8749028 | MeJA induced 9h | 0.162 |
| SRR8749029 | MeJA induced 9h | 0.380 |
| SRR8749030 | Uninduced | 0.772 |
| SRR8749031 | Uninduced | 0.058 |
| SRR8749032 | Uninduced | 0.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 68.103 |
| SRR8400027 | Control - Root | 102.572 |