Gene detail

Gene detail information of Glyur000184s00008193

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01760.1	2.00E-114	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases
NR	XP_004510811.1	0	PREDICTED: tRNA-specific adenosine deaminase 1-like isoform X2 [Cicer arietinum]
trEMBL	tr\|A0A072TQ14\|A0A072TQ14_MEDTR	0	tRNA-specific adenosine deaminase {ECO:0000313\|EMBL:KEH18903.1}

Sequence

Transcript Sequence

>Glyur000184s00008193.1
ATGTCTATGGCGTCTTCGTTTTCATCTTCTGAGGGAACGAGTTTGGGCCAAAGGGTATCCGAAAAGGTTCTTTCTTTATACACTTCTCTTCCCAGGAAAGGCAAGCCTCAAGGCCGTGAAGTCACCGTTTTGGCTGCTTTCCTTCTCTCTTCTCCTTCCATTGACTTGAAGGTNGTTGCACTTGGAACGGGAACAAAGTGTATTGGACGTTCTCTCTTGCGCCCTCATGGTGATGTTGTTCATGATTCCCATGCTGAAGTTATAGCTCGAAGAGCTTTGATGAGGTTCTTCTATACACAGATTCAATATCTTACTGAAACTAGGAATAAGCATGCACCTAGCAATGGAGGCAAACGGTTCAAAGTTGATGACGACAACTTAGCATTGGAATTGGACCCAGGGTGTCTTAATAAAGGGAAATATACCTTGAGAAGGGGTTGGAAATTACATATGTACATATCACAGTTACCATCTAATGGTTCAAAACAAAAAGGGATGGTCCAGAGGAAGCCAGGCCGTGGTGATACAACCCTGTCAGTTAGTTGTTCTGACAAGATAGTACGTTGGAATATTGTTGGTGTTCAAGGAGCTTTGCTTTCCTACTTTCTTCAACCTGTATATATTTCTTCAATTACTGTTGGTCTGCCCCATAACAGTCCTGAAAATTATCATTTTGAGGATAACTTGAAAAGGGCTTTGTATGATCGTATCCTACCCTTGGAGAATGAGCTAANATCTCCATTTCTAGTGAACCAGGCTGCCCCAGTACCACCAAAGGACTTTCAGCAATCTGAGAGTTCTGCTAACACTTTAACATGCGGGTACTCTATATGTTGGAATGAGTGTGGCTTGCATGAAGTCATCCTGGGAACTACAGGAAGAAAGCAAGGCACCTCTGCAAAAGGGGCACTCTACCCATCAACAGAGTCATCTTTTTCCCTGGACAATGGGATTACTTACCGAGAACTTAAGGACGGTGCTGAAGAATATCGTTTAGCTTCCAAAATTTTCAAAGGGAAGCCACCTTTTAGCAACTGGTTCATGAAACCCTTGGACTGTGAGGCATTCCCCATTTCAAAATAATACATAAATTATCTGTCTAAAGCTCATATTTGGTTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00184	160194	163699	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

molecular_function

GO:0003723 RNA binding

GO:0004000 adenosine deaminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000184s00008193.1	PF02137.13	A_deamin	60	157	3.40E-27
Glyur000184s00008193.1	PF02137.13	A_deamin	160	351	2.00E-42
Glyur000184s00008193.2	PF02137.13	A_deamin	60	157	2.90E-27
Glyur000184s00008193.2	PF02137.13	A_deamin	160	278	3.10E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.484
SRR1783600	control	2.544
SRR1783602	moderate drought stress	4.264
SRR1811619	moderate drought stress	4.502

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.334
DRR006520	Root Summer glycyrrhizin high producing strain	3.587
DRR006521	Root Winter glycyrrhizin high producing strain	2.274
DRR006522	Root Winter glycyrrhizin high producing strain	1.943
DRR006523	Root Summer glycyrrhizin low producing strain	3.733
DRR006524	Root Summer glycyrrhizin low producing strain	3.345
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.858
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.204

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.835
SRR2868004	Drought Stress (root)	4.384
SRR2967015	Control (root)	4.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.626
SRR9715740	Leaf	5.047
SRR9715741	Leaf	3.485
SRR9715739	Root	1.833
SRR9715742	Root	1.903
SRR9715743	Root	1.427

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.864
SRR8749028	MeJA induced 9h	1.708
SRR8749029	MeJA induced 9h	1.524
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.109

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.996
SRR8400027	Control - Root	7.480