Gene detail information of Glyur000184s00008190 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01770.1 | 2.00E-146 | |
| NR | KEH18909.1 | 0 | propionyl-CoA carboxylase, putative [Medicago truncatula] |
| COG | YP_004179609.1 | 8.00E-14 | hypothetical protein Isop_2488 [Isosphaera pallida ATCC 43644] |
| trEMBL | tr|A0A072TN59|A0A072TN59_MEDTR | 0 | Propionyl-CoA carboxylase, putative {ECO:0000313|EMBL:KEH18909.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00184 | 143509 | 150139 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000184s00008190.1 | PF07287.6 | DUF1446 | 3 | 132 | 2.30E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.457 |
| SRR1783600 | control | 1.488 |
| SRR1783602 | moderate drought stress | 2.328 |
| SRR1811619 | moderate drought stress | 2.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.039 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.078 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.376 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.173 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.018 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.440 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.889 |
| SRR2868004 | Drought Stress (root) | 20.548 |
| SRR2967015 | Control (root) | 25.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.501 |
| SRR9715740 | Leaf | 25.641 |
| SRR9715741 | Leaf | 30.462 |
| SRR9715739 | Root | 2.342 |
| SRR9715742 | Root | 2.737 |
| SRR9715743 | Root | 2.256 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.191 |
| SRR8749028 | MeJA induced 9h | 20.049 |
| SRR8749029 | MeJA induced 9h | 6.517 |
| SRR8749030 | Uninduced | 23.619 |
| SRR8749031 | Uninduced | 17.088 |
| SRR8749032 | Uninduced | 21.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.464 |
| SRR8400027 | Control - Root | 9.183 |