Gene detail

Gene detail information of Glyur000184s00008179.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13130.1	2.00E-108	Cellulase (glycosyl hydrolase family 5) protein
NR	XP_011094713.1	0	PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
COG	NP_923239.1	3.00E-43	carbonyl reductase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	3.00E-106	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A072TZ08\|A0A072TZ08_MEDTR	0	Hydrolyzing O-glycosyl compounds hydrolase {ECO:0000313\|EMBL:KEH18775.1}

Sequence

Transcript Sequence

>Glyur000184s00008179.1
TTATTGAGGTTAACAATGCAGGGATTAATGGATTTGTAATCAAAGACAAAGATTTGTTTATGGTGGCTGTGACGAAGCGTGGGGCATTATCAGAAGATGATGAGAGAAAGGCAATGACACAAACATATGCGTCAGCTAAAGAATGCTTGCTAATAAATTATTATGTTGCTAAAACAACCACTGAATCCCTTCTGCCCCTCCTTCAGTTATCTGATTCCCCAAGAATTGTGAATGTATCATCCGCTTTAGGTCGATTAAAGGTAACCTTGAGTTTATATACAAAAAGTGACATTTTCCTCATCTCTCATTCTACCCCTCCTTCAAATGTACCAAATGAATGGGCTAAAGGAGTCCTCAGTGAGGCTGATAACCTTACAGAAGAGAAGGTGGATGAAGTACTGAAGAAGTATCTAGAAGATTTCAAAGAAGGTTCATTAGAAAGCAAAGGGTATGCTGTTGTTACAGGTTCAAACAAAGGGATAGGATTGGAGACTGTAAAAGGGTTGGCCTCAAATGGTGTCAAGGTGGTGCTCACAGCTAGGAATGAGAAGAGGGGNCTTCAAGCTGTTGAGAAGTTGAAAGGCTGTGGTTTCTCCTCCAACCTTGTGGTTTTTCACCAGCTTGATGTCACTGACCCTTATAGTATTGCATCCTTAGTTGAGTTTGTTAAGACCCAGTTTGGGAGACTTGATATCTTGGTGAACAATGCAGGAATCAGTGGGTTCAACACAGATGAGATGGTGGAACCAATTATTAACTGGAGGGAACTGACTCAAACTTATGAGATGGCTAAAAAATGCCTAACAACAAATTACTATGGTGCTAAGGAAACTACTGAAGCTTTTCTTCCCCTTCTTCAGTTATCTGATTCACCTACGATTGTTAATGTTTCCTCCCAAGCAGGGCTATTGAAGTACATATCAAACGAATGGGCTAAGAGTGTGTTAGATGATACTGAAAATCTTACCGAGGAGCTAATAGATGAGGTACTGAAGGAGTTCATGAAAGACTTAAAACAAGGTTCACTTGGAAACAAGGGTTGGCCAACCTATCTATCTGCCTATATGGTCTCAAAAGCAGCCATGAATTCCTACACAAGACTTGTAGCCTATAGACACCAAAACTTGTGCATCAATTGTGTGTGCCCTGGTTCTGTCAAAACAGACATGAGCAGAAACACAGGCATATTGTCTGTTGAAAATGGTGCTGCTAGTGTTGTGAGATTAGCACTGCTCCCCAATGCATCACATTCCATCAATGCCTATCCTCTATCAACCCAAAACAGATGGATCATTGATGATTCAACAGGGCAACGTGCAAAGCTTGTTTGTGGCAACTGGGCTGGTCACCTTCAACCAATGATCCCTGAGGGTCTTGACAGAAGACCCTTGAAGGAACTTGTCACTGAGCTCGTGAAACACAAGTTCAACTGTGTTCGTCTCACCTATTCAATCTACATGTGGACCCGCCACGGTCACCACCTTGTGAATGACACCTTTAATGATTTGGATGCACCAGAGGTGGTGGCTGGCATTGCACAGAACAACCCTTCTGTGCTGAAAATGACTCACATTGAGGCCTTTGGTGCTGTGGTTCAGGAGCTTGGTGCACAAAACGTGAAGGTGTTGCTTGATAACCATGTCAGTGAACCAAAGTGGTGCTGTCATGATGATGATGAGAATGGTTTCTTTCATGACAGACACTTTGATCCTCAGGAATGGGTGCATGGCCTTACTTTGGCTGCCAACCACTTTGCTGGACAACATGCTGTTGTGGCAATGAGCTTAAGGAATGAATTGCATGGTCCACGCCAAAATCTGAGAGATTGGTATAGGTACATGAGCCAAGGAGCACTGGCCATCCATAAAGCAAACCCAAATGTGCTTGTGGTTATATCAGGTTTGAACTATGACACTGAGTTGCAGTTCTTGAGGAACAAACCATTGAAGATAGACTTGGGCAAAAAGATGGTGTTTGAGACACATTTGTACTCATGGTCTGGAATTGGGACACTGAAATTGAAAGAGATTTGGACCAAGCAACCATTGAACAGGATATGTGCCAATAGCATTAAGGGGATAGACCACCGAGCTGGCTTCCTTACCACTGGTGAGAATGCAGCACCTTTGATCTTTACTGAGTTTGGGTTTGACCAGACAGGTTCTTCAGAGGAAGACAAGAGGTTCTTGACATGCCTTCAGACCTATCTTGTTGGAAGAGACATGGATTGGGGCTTGTGGGCATTCCATGGTGACTATTATGTTAGAGAAGACAAGGTTCAACTTGATGAGACATTTGGTGTTATGGATGCCACTTGGCACAAGCTGAGATACCCAAATTTCACTGACAAGTTCCAGCTTCTGCAAAGGAAGAATCAAGATCCTACCTCCAAAGTCTCCCAAGCACATATCATGTACCACCCACTTACTGGTCAATGTGCCCAAGTGAATGAAAAGAATGAACTTGAAATTGGTAGCTGTGAGGGCCAAAACAGATGGGTTTATAGTAAAGATGGGTCTCAAATCCTTTTGAGTGGCACTAAGAAGTGCTTAACTGCCACTGGTGAAGGGCTTCCGGTTGTTGTTTCTGATGATTGCCAAAGCAAGAACAGTTCTTGGAAATCAGAATCACTTTCTAAACTTCATTTGGCTACAGTGGATCAAGATGGGAACCAGCTTTGCTTGCATAAGGACTCCAACTCATCTGTCATTGTGACTTCAAAATGTATCTGCGTAAGTGATGACTCTCTCTGTCTGGATGATCCCCAGAGCCAGTGGTTCCAGCTTGTTGCCACTAATTTNTATGCGGTAGTGACAGGAGCTAATAAGGGGATTGGTTATGGGGTATGCAAGAAATTGGCTTCAAAAGGTATTGTGGTGGTGCTTACAGCTAGAAATGAGAAAAGGGGTTTGGAAGCTGTGGAGAGTTTGAAGGAGTTAGGCCTCTCAGAGTTTGTGGTTTATCATCAACTTGATGTAACTGACCCTGCCAGTGTTGCTTCCTTAGCAGAATTCATCAAAGCCCGGTTTGGAAAACTTGATATCTTGGTGAACAACGCAGGAGTTGCTGGGGGAATAGTAAATGGGGAGAATGTTCTTAGAAGGAAAAGGGGTGAAATATCGGATTGGAACTTAATAGTGCGTCAGAACTATGAATTAGCCAAAGAATGTGTTGAAACGAACTTCTTTGGTGCAGAAAGAGTAACTGAAGCTCTTCTTCCCCTTCTCCAACTATCCACTTCACCCCGGATTGTCAATGTCTCCTCTAGATGTGGATTCTTGAAGAATATACCAAATGACTGGGCAAGAGGAGTGTTTAGTGACATTGAAAGCCTTACAAATGAAAAACTTGGTGAGGTTCTTAGGAAGTTTTTGAAAGATTACAAAGAAGGGTCATTGGAAACAAAAAATTGGCCACCTGTGATTTCAGGTTACACCATGTCAAAAGCAGCTTTAAATACCTACACAAGGCTGCTAGCTAAGAAGTTCCCTCNTTTCCGCATAAATTGTTTATGCCCTGACTTTGTCAAGACTGATATTAACCAGAACACAGGCTTTCTAAGCATTGATGAAGGTGCTGAAGCTCCTGTTGAGCTAGCATTGTTGCCAGATGATGGTCCATCTGGCCTCTTTTTCACAAAGGGAGCAAATAAGGGAATAGGATTTGCAGTATGCAAGCAATTGGCTTCTAATGGGGTCACTGTGGTGCTAACAGCAAGAGATGAAAAGAGGGGTCTTGAAGCTGTCGAGAAACTGAAACAGCTTGCTCTGCCTGGCCTTGTGGTCTTTCGTCAACTTGATGTCACAGATCCTGCAAGCANAGGGTCATTTGCAGATTTCATCCGGAACCAATTTGGAAAACTCGATATCTTGGTGAATAATGCTGGAATTACCGGAGCACAAGTGGACAGTGAGGCTTTGGCTGCTGCTAATATTGTGGAAAATGCTGGCCGCATTGATTGGAGTAAAATATTAACTGAAAACTACGAATTAATTGAAGCAGGCATAAAAACAAACTACTACGGAGCCAAGGAATTAAGCAAAGCACTTATTCCCCTTCTTCAGTTTTCAGGCTCACCAAAAATTGTCTATGTTTCCTCATCCATGGGAAGGCTGGAGAAGTTTCCAAATGGATGGCCTAAAGAAGTACTAAGTGATGTTCAAAACCTTACTGAGGAGAAGATTGATGAAGTTTTGAAAGAATTTCTAAAGGATTTTAAAGAGGGTTCACTAGAAACCAAAGGCTGGCCTCTCAATATGTCTGCATATGTGGTCTCCAAGGTTGCTCTAAATGCCTACACAAGGGTTCTGGCCAGGGAATACCCATCAATCTGTGTTAATGCTATTTGCCCTGGCTATGTGAAAACGGATATAAACTACAATACAGGTCATCTAACACCTGATGAAGGTGCTGAACCTATTGTCAGGTTGGCACTGCTACCTGATGGTAGTCCTTCTGGTCTCTTCTTCATTAGAGGAGCAAACAAAGGGATTGGATTTGAGATATGCAAGCAGTTGGCTTCTAAAGGAATCACAGTGGTTCTAACAGCAAGAGATGAGAGAAGGGGTCTTGAAGCTGTTGAGAAACTCAAACAGCAGCTTGGTCTCTCTGACTCTGACCAAGTGGTTTTCCATCAGCTTGATGTGATTGACCCTAATAGCATAGCATCCCTTGCAAATCTCATCAAAACCCGGTTTGGGAAACTTGATATCTTGGTGAATAATGCAGGAATAGTTGGATTAAATGTTGACCGAGATGCATTGGAAGCTTCAATTGCTGCTGGGGAAATAGGTGATAATCTTCATTGGACTACATTCACCACNTCAACTGATGAATCTGTAGCAGCATGCCTTAGAGTAAACTACTATGGTGCCAAAGACATGTGTGAAGCACTTATTCCCCTTCTAAAATTGTCAGACTCACCAAGGATTGTTAATGTTTCCTCCATCCGTGGTAATTTGAAGTTTATGCCAAATGGATGGGCTAAAGGAGTCCTAAGTGATGTTGAAAGCCTGACAGAGGAAAAACTGAATGAAGTTTTGAATCAGTTCNTAGAAGATTTTAAAGAGAGTTTATTAGAAACCAAAGGCTGGCCTACTACTACTTCACCTGCATATAGAGTCTCCAAAGCTGCTTTAAATGCATACACAAGGATTCTTGCCAAGAAGTACCCATCTTTCTGCATCAATGCTGTTTGCCCTGGTTATGTNAAAACAGATTTAAACTACCACACTGGCTATTTGACTGTTGATGAAGGTGGTGAAAGTGTTGTAAGGGTTGCCTTGCTACCTAATGGTGGTCCTTCTGGCCTCTTTTTNTCTCAAAATGAAGTGGCACCGTTTTGATTGAAAGTCAGTACTCAGTACTAGTAGTATCTGCTATGTTATTAGAGAAGTAGATGACCTTGCCACGTATCAATAAACTTACATGTGTGTTTGCATTAGACTNTGTAAACTTGATTTCAGTAAAGTGATTTATGATTGAAAAACTTTGCCTTTTTAAGTGA

Protein Sequence

>Glyur000184s00008179.1
MVAVTKRGALSEDDERKAMTQTYASAKECLLINYYVAKTTTESLLPLLQLSDSPRIVNVSSALGRLKVTLSLYTKSDIFLISHSTPPSNVPNEWAKGVLSEADNLTEEKVDEVLKKYLEDFKEGSLESKGYAVVTGSNKGIGLETVKGLASNGVKVVLTARNEKRGLQAVEKLKGCGFSSNLVVFHQLDVTDPYSIASLVEFVKTQFGRLDILVNNAGISGFNTDEMVEPIINWRELTQTYEMAKKCLTTNYYGAKETTEAFLPLLQLSDSPTIVNVSSQAGLLKYISNEWAKSVLDDTENLTEELIDEVLKEFMKDLKQGSLGNKGWPTYLSAYMVSKAAMNSYTRLVAYRHQNLCINCVCPGSVKTDMSRNTGILSVENGAASVVRLALLPNASHSINAYPLSTQNRWIIDDSTGQRAKLVCGNWAGHLQPMIPEGLDRRPLKELVTELVKHKFNCVRLTYSIYMWTRHGHHLVNDTFNDLDAPEVVAGIAQNNPSVLKMTHIEAFGAVVQELGAQNVKVLLDNHVSEPKWCCHDDDENGFFHDRHFDPQEWVHGLTLAANHFAGQHAVVAMSLRNELHGPRQNLRDWYRYMSQGALAIHKANPNVLVVISGLNYDTELQFLRNKPLKIDLGKKMVFETHLYSWSGIGTLKLKEIWTKQPLNRICANSIKGIDHRAGFLTTGENAAPLIFTEFGFDQTGSSEEDKRFLTCLQTYLVGRDMDWGLWAFHGDYYVREDKVQLDETFGVMDATWHKLRYPNFTDKFQLLQRKNQDPTSKVSQAHIMYHPLTGQCAQVNEKNELEIGSCEGQNRWVYSKDGSQILLSGTKKCLTATGEGLPVVVSDDCQSKNSSWKSESLSKLHLATVDQDGNQLCLHKDSNSSVIVTSKCICVSDDSLCLDDPQSQWFQLVATNXYAVVTGANKGIGYGVCKKLASKGIVVVLTARNEKRGLEAVESLKELGLSEFVVYHQLDVTDPASVASLAEFIKARFGKLDILVNNAGVAGGIVNGENVLRRKRGEISDWNLIVRQNYELAKECVETNFFGAERVTEALLPLLQLSTSPRIVNVSSRCGFLKNIPNDWARGVFSDIESLTNEKLGEVLRKFLKDYKEGSLETKNWPPVISGYTMSKAALNTYTRLLAKKFPXFRINCLCPDFVKTDINQNTGFLSIDEGAEAPVELALLPDDGPSGLFFTKGANKGIGFAVCKQLASNGVTVVLTARDEKRGLEAVEKLKQLALPGLVVFRQLDVTDPASXGSFADFIRNQFGKLDILVNNAGITGAQVDSEALAAANIVENAGRIDWSKILTENYELIEAGIKTNYYGAKELSKALIPLLQFSGSPKIVYVSSSMGRLEKFPNGWPKEVLSDVQNLTEEKIDEVLKEFLKDFKEGSLETKGWPLNMSAYVVSKVALNAYTRVLAREYPSICVNAICPGYVKTDINYNTGHLTPDEGAEPIVRLALLPDGSPSGLFFIRGANKGIGFEICKQLASKGITVVLTARDERRGLEAVEKLKQQLGLSDSDQVVFHQLDVIDPNSIASLANLIKTRFGKLDILVNNAGIVGLNVDRDALEASIAAGEIGDNLHWTTFTTSTDESVAACLRVNYYGAKDMCEALIPLLKLSDSPRIVNVSSIRGNLKFMPNGWAKGVLSDVESLTEEKLNEVLNQFXEDFKESLLETKGWPTTTSPAYRVSKAALNAYTRILAKKYPSFCINAVCPGYVKTDLNYHTGYLTVDEGGESVVRVALLPNGGPSGLFXSQNEVAPF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00184	84431	110505	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0008152 metabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000184s00008179.1	PF00106.20	adh_short	131	286	1.60E-20
Glyur000184s00008179.1	PF00150.13	Cellulase	443	727	1.40E-19
Glyur000184s00008179.1	PF00106.20	adh_short	916	1076	2.30E-19
Glyur000184s00008179.1	PF00106.20	adh_short	1195	1281	5.10E-12
Glyur000184s00008179.1	PF00106.20	adh_short	1470	1634	7.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.552
SRR1783600	control	1.669
SRR1783602	moderate drought stress	0.774
SRR1811619	moderate drought stress	0.811

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.039
DRR006520	Root Summer glycyrrhizin high producing strain	1.072
DRR006521	Root Winter glycyrrhizin high producing strain	0.142
DRR006522	Root Winter glycyrrhizin high producing strain	0.159
DRR006523	Root Summer glycyrrhizin low producing strain	1.319
DRR006524	Root Summer glycyrrhizin low producing strain	1.160
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.711

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.449
SRR2868004	Drought Stress (root)	71.289
SRR2967015	Control (root)	30.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.427
SRR9715740	Leaf	17.883
SRR9715741	Leaf	16.667
SRR9715739	Root	1.452
SRR9715742	Root	2.183
SRR9715743	Root	1.774

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.831
SRR8749028	MeJA induced 9h	13.085
SRR8749029	MeJA induced 9h	10.023
SRR8749030	Uninduced	4.679
SRR8749031	Uninduced	3.931
SRR8749032	Uninduced	6.942

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.067
SRR8400027	Control - Root	6.091