Gene detail information of Glyur000184s00008173 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60990.1 | 2.00E-143 | DEA(D/H)-box RNA helicase family protein |
| NR | XP_003521207.1 | 0 | PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like isoform X1 [Glycine max] |
| COG | YP_548362.1 | 2.00E-74 | DEAD/DEAH box helicase [Polaromonas sp. JS666] |
| Swissprot | tr|Q8GY84|RH10_ARATH | 0 | DEAD-box ATP-dependent RNA helicase 10 |
| trEMBL | tr|K7KC67|K7KC67_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G01710.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00184 | 48952 | 55096 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000184s00008173.1 | PF00270.24 | DEAD | 34 | 208 | 1.10E-40 |
| Glyur000184s00008173.1 | PF00271.26 | Helicase_C | 239 | 315 | 4.60E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.309 |
| SRR1783600 | control | 8.934 |
| SRR1783602 | moderate drought stress | 10.990 |
| SRR1811619 | moderate drought stress | 11.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.704 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.229 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.476 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.408 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.149 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.239 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.668 |
| SRR2868004 | Drought Stress (root) | 20.403 |
| SRR2967015 | Control (root) | 20.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.313 |
| SRR9715740 | Leaf | 15.875 |
| SRR9715741 | Leaf | 14.275 |
| SRR9715739 | Root | 4.678 |
| SRR9715742 | Root | 11.273 |
| SRR9715743 | Root | 9.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.499 |
| SRR8749028 | MeJA induced 9h | 27.216 |
| SRR8749029 | MeJA induced 9h | 39.836 |
| SRR8749030 | Uninduced | 20.102 |
| SRR8749031 | Uninduced | 10.048 |
| SRR8749032 | Uninduced | 14.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.681 |
| SRR8400027 | Control - Root | 15.950 |