Gene detail

Gene detail information of Glyur000184s00008172

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G16710.2	2.00E-43	glycosyltransferase family protein 28
NR	NP_001237879.1	1.46E-66	uncharacterized protein LOC100527305 [Glycine max]
trEMBL	tr\|C6T3X6\|C6T3X6_SOYBN	5.00E-67	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G13540.1}

Sequence

Transcript Sequence

>Glyur000184s00008172.1
AATNCATTTTCCTTCTCAGCTTTCACTGTAACGAAAGAAAGCATTTTGCAGGTCGGTTCGGACTTTCTGTCTGTGATGCTTTTGTTCAGCGATGGAATCGATTCTCCCCNAACGCTGACTGTCGTTTTTAATGTCAACACACTTTCAACTTGTGCGTTTTTGGGGGAAGAAGAAAGAATCGAATCGAAATCTGAGTGGGGGGTGCTTAATTTAATTAAATGGGGGGTGAGAAGAGGAGGAGAGTGGTTTTTGTGACCGNAGGGACGACTTGTTTCGACGCTCTGGTGAGAGCTGTGGATTCCTCAAATGTTAAAAAGGAGTTGCTTGCAAAAGGGTATACCTATCTTCTCATCCAAATGGGTCGTGGATCCTATGTTCCTACCAAGGGGAGTTGGAATTTGAAGTTGGGAAAGGGGAAGAGAGAGAAAAGGTTGGGTTTTTGGTTTTGGGGTGGTGGCCGTCCCGCGGCGGCTGAGCACCAGATCAACCCTCCCGCGGCTGCCAGAGCTGCCACGAAGATCTGGAAGCTTACGCTGAAGACGACAGAGATGGAGACGGTGTACGACCTCGGGGCGAAGACGATCAAGGCGCTCGAAAAGGAGAAGGTGACGAGCGGTGACGTCATCGCCATCGACAAGGCCTCCGGGAAGATCACGAAGCTCGGAAGGTCGTTCTCCCGTCCGGCACAGGTGAAACTGCTTCCTCTGGCTGGCACGACGGTGATAAGCTCGAAACCTCGGGAACAGCTGCCTCGCTGCTTCTCCATGCGTCCGCCGCACAAGGAGGATCTTCGCAGTGGTTTGCGTCATCCTGTCAACGATCGGCTTTGTGGTCTGCCGCAAGTGGTGATGACGGAGGCCATGTCTGAAGGAGGAGATGGTTCATTGGCTGTAGATTACTTCACTTTTTCTTCCAGTATTGCAGACCATCTCAGATCTGCTTCTCTTGTNATTAGCCATGCAGGGTCAGGATATGAGACATTGCGGCTAGGCAAACCTTTAATTGTGGTTGTAAATGAAGAGTTGATGGATAATCATCAAAGTGAGCTTGCAGAAGAACTTGCCAACAGAAAACATCTGTATTGTGCAATTTGTGCTAGTCCTCAAACACTCCATCAAACTATAGCAGATATGGATTTAAATTCTCTCCTTCCTTACTCTCCAGNTGATGCTACACCAGTGGCCAAGCATATAAACAGATTCCTTGGTTTTCCTGATGATTGATCCGAAGGCTCTTTTTTTTGTTTGTTAAATGTCTCTGAGAGGGAAAATAATCTATTTTGATAATATTTGGATGCCCCAGATATTTNAAGTATTAATGCTGTATTGGAGATGGGGTGTGTGTTTGAGAGAGAGATGTATAGTAAGAAGTTAATGATATTGTTGGATTCAGCTCTTTTAGGAACTCCTGCACTTTCCTATTCAATGGGTATTAATGTTATTGCACTTTCTTTTGGTATTAAATATTAATGTTATACTTTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00184	44897	48627	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07432	ALG13	EC:2.4.1.141	N-Glycan biosynthesis	map00510
			Various types of N-glycan biosynthesis	map00513

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0030259 lipid glycosylation

molecular_function

GO:0003678 DNA helicase activity

GO:0005524 ATP binding

GO:0016758 transferase activity, transferring hexosyl groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000184s00008172.1	PF06068.8	TIP49	94	156	3.70E-14
Glyur000184s00008172.1	PF04101.11	Glyco_tran_28_C	222	322	8.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.626
SRR1783600	control	3.444
SRR1783602	moderate drought stress	4.369
SRR1811619	moderate drought stress	4.354

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.193
DRR006520	Root Summer glycyrrhizin high producing strain	5.370
DRR006521	Root Winter glycyrrhizin high producing strain	4.522
DRR006522	Root Winter glycyrrhizin high producing strain	4.594
DRR006523	Root Summer glycyrrhizin low producing strain	3.477
DRR006524	Root Summer glycyrrhizin low producing strain	3.449
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.616
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.607

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.164
SRR2868004	Drought Stress (root)	7.302
SRR2967015	Control (root)	5.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.576
SRR9715740	Leaf	6.106
SRR9715741	Leaf	4.519
SRR9715739	Root	1.684
SRR9715742	Root	2.564
SRR9715743	Root	2.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.808
SRR8749028	MeJA induced 9h	1.431
SRR8749029	MeJA induced 9h	0.997
SRR8749030	Uninduced	1.189
SRR8749031	Uninduced	0.299
SRR8749032	Uninduced	0.282

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.915
SRR8400027	Control - Root	8.443