Gene detail information of Glyur000184s00008170 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00560.1 | 2.00E-123 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003528874.2 | 0 | PREDICTED: methionine adenosyltransferase 2 subunit beta-like [Glycine max] |
| COG | YP_006256990.1 | 9.00E-38 | dTDP-4-dehydrorhamnose reductase [Solitalea canadensis DSM 3403] |
| trEMBL | tr|K7L092|K7L092_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G08161.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00184 | 37510 | 41353 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000184s00008170.1 | PF04321.12 | RmlD_sub_bind | 61 | 369 | 3.60E-47 |
| Glyur000184s00008170.2 | PF04321.12 | RmlD_sub_bind | 50 | 358 | 3.20E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.021 |
| SRR1783600 | control | 4.139 |
| SRR1783602 | moderate drought stress | 2.870 |
| SRR1811619 | moderate drought stress | 2.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.513 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.042 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.248 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.762 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.994 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.263 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.117 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.108 |
| SRR2868004 | Drought Stress (root) | 11.623 |
| SRR2967015 | Control (root) | 12.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.250 |
| SRR9715740 | Leaf | 3.326 |
| SRR9715741 | Leaf | 2.687 |
| SRR9715739 | Root | 1.472 |
| SRR9715742 | Root | 1.484 |
| SRR9715743 | Root | 2.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.696 |
| SRR8749028 | MeJA induced 9h | 14.135 |
| SRR8749029 | MeJA induced 9h | 15.030 |
| SRR8749030 | Uninduced | 8.460 |
| SRR8749031 | Uninduced | 7.494 |
| SRR8749032 | Uninduced | 9.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.068 |
| SRR8400027 | Control - Root | 8.135 |