Gene detail

Gene detail information of Glyur000184s00008168

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63220.1	9.00E-44	Calcium-dependent lipid-binding (CaLB domain) family protein
NR	XP_003627627.1	4.34E-84	Elicitor-responsive protein [Medicago truncatula]
Swissprot	tr\|Q9C8S6\|Y1322_ARATH	1.00E-54	C2 domain-containing protein At1g63220
trEMBL	tr\|G7LCN6\|G7LCN6_MEDTR	2.00E-84	Uncharacterized protein {ECO:0000313\|EMBL:AFK38684.1}

Sequence

Transcript Sequence

>Glyur000184s00008168.1
AAACGATTCAATCATTCAAACATTTAAAAGGGAAAAGTTGGATCCAGACAAAATCCAACTCCATTTTAATACTATATATATACTGGTTCAGGCATTTATGTCACAGTGACTTTCTACCTTTCCTTCAACTTTAAGAAGCATATATCGAATATTGTAGAGAATCATCCAGAATCAAAAGTTCTTGACCCTTTAGAATTTGTGAAGTGTTAAGTGTCCAAACTTCTAATTCCAAAGGCAAAGATGCCTCGTGGGACTCTTGAAGTTGTTTTGATCAGTGCCAAAGGACTCGATGACAATGATTTTCTCTCCGACATAGATCCTTATGTGATTCTCAGTTACCGGACACAGGAGCATAAGAGCACTGTGCAAGAAGGTGCTGGATCCAACCCACAATGGAATGAGACCTTTCTTTTCACTGTTTCTGACAGTGCTTCTGAGCTTGCTCTGAGGATAATGGAGAAAGACAACTTTAGTAATGATGATTTTCTCGGCGAGGCAATAATTCCTTTAGAGGCAGTGTTTGAAGAGGGTAGCCTTCCAGAGGTTGCTTACAAACTTGTGAAGGACCAAGAATATTGTGGAGAGATTAAGGTGTCACTCACTTTTACTGCTGAGAGAAATGGTGACCTGGGTTACAATGCAGAGGAGGAGACCTATGGTGGATGGAATCAATCGGCTAGGGAATTTTAAAGTGAAGGAAGAAGGATTTACATATCTCCCAGACCCAGAATTACTTTTAGAACAAAAAATAAGCAGTTTTTGGGTCACTTCAGGAATTTCAATTACTGTGTTTTTTGGTGTGATGANCTGATAGTGTTTTGCTTTCCTCCCTTTTGAGATTTATGCTTAACATGACATTTTATGTACTTATAAAGAGCAGTGTTATTTTATTTTGTTGGAACTTTATAACTTATTATTATTATTAAAGAGTAAAAAGATGGTGTTGGAATTCAATGTGATTGTAATGTGAGTCAAGTTATTTAGTTAGAATGATATTTTTCTCTTATTTTTAATAATAAAAAATCTATAATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00184	28908	31005	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000184s00008168.1	PF00168.25	C2	6	86	1.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	138.637
SRR1783600	control	139.124
SRR1783602	moderate drought stress	60.412
SRR1811619	moderate drought stress	60.649

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	119.596
DRR006520	Root Summer glycyrrhizin high producing strain	119.684
DRR006521	Root Winter glycyrrhizin high producing strain	43.217
DRR006522	Root Winter glycyrrhizin high producing strain	42.311
DRR006523	Root Summer glycyrrhizin low producing strain	96.906
DRR006524	Root Summer glycyrrhizin low producing strain	96.329
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.424
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.917

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	148.698
SRR2868004	Drought Stress (root)	150.165
SRR2967015	Control (root)	116.019

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.438
SRR9715740	Leaf	17.736
SRR9715741	Leaf	24.796
SRR9715739	Root	74.736
SRR9715742	Root	58.454
SRR9715743	Root	63.719

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.992
SRR8749028	MeJA induced 9h	73.517
SRR8749029	MeJA induced 9h	79.798
SRR8749030	Uninduced	83.751
SRR8749031	Uninduced	47.237
SRR8749032	Uninduced	45.951

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	187.139
SRR8400027	Control - Root	186.543