Gene detail

Gene detail information of Glyur000183s00013071

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06860.1	2.00E-71	polygalacturonase inhibiting protein 1
NR	CAR92537.1	1.60E-127	putative polygalacturonase-inhibiting protein precursor [Phaseolus lunatus]
COG	YP_004775215.1	1.00E-22	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P58822\|PGIP2_PHAVU	1.00E-128	Polygalacturonase inhibitor 2 (Precursor)
trEMBL	tr\|B9W4U2\|B9W4U2_PHALU	6.00E-128	Putative polygalacturonase-inhibiting protein {ECO:0000313\|EMBL:CAR92537.1} (Precursor)

Sequence

Transcript Sequence

>Glyur000183s00013071.1
ATGGCAACCAGCAGCTCGCTGTCCATGTTCCGCTCATGCTTCCTCCTACAACTAGTTACACTACTAATGCTGCTCTACTCCACCACCCTTGCACTCTCAGAGAAGTGCAACCCGCAAGACAAGAGAGCACTCCTCCAAATCAAGAAAGGCCTAAACAACCCATCCGCTCTGTCATCATGGGACCCACACACCGACTGCTGCGACGACACCAACAAGCCATGGAAAGGAGTCACGTGCGGCGACAGTAGCAGCAGCAGTAGCAGCCAAGGCAACTACAAGAACCGTGTCAACTACCTCAGCATCTCCGACATCAACCTCCACCCTCACCAACTTCCCATCCCTTCCTCCATCGGCAACCTCCCTTTCCTCAACTNCCTCTACATCAACCGAATCCCAAACCTCATAGGCCCAATCCCAGAGACCATAACAAACCTCACCAACCTTCGCTACCTATCCATCACCAACACCCTGTTATCCGGCACCATACCCGATTACTTGGGTGNCCTCAGAAGCCTCGTAACATTGGACCTCTCAAACAGCAACCTCGCCGGTGGAATCCCACCTTCTCTCTCTAACCTTCACAACCTCCAAGGTATCNGCTTGGACGGTAACTGGCTCAGTGGTTCAATCCCCGATTCGTTCGGTTCCTTTAACCGTTTTATCTTCACCTCGCTCACTCTCTCGCGTAACCAGCTCTCGGGGGACATACCGCAGTCTTTGGGGAATCTGAACCTGGCTTTCGTGGACTTGTCAAGTAACAGGCTCACAGGTGACGCGTCTATGTTGTTTGGGTCCAACAAACGGACCCAGAGGATCGACCTTTCGAGGAATAGGTTGGAGTTTGATTTTGGGAAAGTTGGGTTGTCGAGGAATTTGGACTTGGAGGCGTTGGATCTGAGGNAGAATGGTATCTATGGGAGGCTCCCTCGGGGACTCACGGCGCTGAGATTCTTGCGTGAGCTGAATGTGAGCTACAACAGTCTGAGCGGTGAGATTCCNAAAGGTGGCTACTTGCAGAGTTTCCACGTGTCTTCTTATGTGCATAACAAGGGCTTGTGTGGGTCTCCACTTCCAAGCTGCAAGGCCAACAGGGCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	265131	266228	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013071.1	PF08263.7	LRRNT_2	38	79	7.50E-13
Glyur000183s00013071.1	PF13855.1	LRR_8	146	204	2.50E-06
Glyur000183s00013071.1	PF13516.1	LRR_6	223	242	0.4
Glyur000183s00013071.1	PF00560.28	LRR_1	318	335	0.27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.100
SRR1783600	control	0.100
SRR1783602	moderate drought stress	0.623
SRR1811619	moderate drought stress	0.586

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	7.693
DRR006522	Root Winter glycyrrhizin high producing strain	7.858
DRR006523	Root Summer glycyrrhizin low producing strain	0.201
DRR006524	Root Summer glycyrrhizin low producing strain	0.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.423
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.338

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.505
SRR2868004	Drought Stress (root)	0.452
SRR2967015	Control (root)	0.289

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.623
SRR9715740	Leaf	2.703
SRR9715741	Leaf	3.392
SRR9715739	Root	3.109
SRR9715742	Root	2.740
SRR9715743	Root	2.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	74.488
SRR8749028	MeJA induced 9h	232.063
SRR8749029	MeJA induced 9h	470.061
SRR8749030	Uninduced	70.431
SRR8749031	Uninduced	629.779
SRR8749032	Uninduced	950.300

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.914
SRR8400027	Control - Root	1.483