Gene detail

Gene detail information of Glyur000183s00013068

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06860.1	2.00E-72	polygalacturonase inhibiting protein 1
NR	XP_003531065.1	0	PREDICTED: polygalacturonase inhibitor 2 [Glycine max]
COG	YP_004775215.1	2.00E-22	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|P58822\|PGIP2_PHAVU	0	Polygalacturonase inhibitor 2 (Precursor)
trEMBL	tr\|Q0WX03\|Q0WX03_SOYBN	0	Polygalacturonase inhibiting protein {ECO:0000313\|EMBL:CAI99394.1} (Precursor)

Sequence

Transcript Sequence

>Glyur000183s00013068.1
ATGGGAACCATGTGCTTCCCCAAACGCGTCCTACTTCAACTCCCACTCCCACTGCTCCTAATCCTCTTCATCCCCTCCCTCTCGGTGACGGTCTCAGAGAAATGCAACCCACAGGACAAAAAGGCCCTCCTCCAAATCAAGACAGAGCTNGGCAACCCAACCCAGCTCTCCTCATGGAACCCAACCACCGACTGCTGCCAACCCACCTGGCAAGGCGTCTCCTGCGACACCGACACCCAAACCTACCGCGTCAACAACCTCGACCTCTCCGACCTCGCCCTCCCCGGACCCCACCCCATTCCCCCCTCCATCGCCAACCTCCCTTCCCTCAACTTCCTCTCCCTCTCCGGCATCCCCAACCTCGTTGGCACAATCCCGCCGGCCATCGCCAAACTCACCAAGCTCCGCTACCTCTACATCACCCACACCAACATCTCCGGCGAGATACCCGAATTCCTCTCCCAGATCAAAACCCTAGTCACCCTCGACTTCTCTCACAACAACCTCACCGGCCCCCTCCCCGCCTCCCTCTCCTCTCTCCCCAACTTCGTTGGAATCACCTTCAACGGCAACCGCCTCACCGGNGCCATCCCGGACTCGTACGGCTCCTTCTCGAAGCTCTTCACGTCCCTCACGCTCTCGGACAACCGCCTCTCCGGGAAGATCCCGGCGTCGCTGGCGAAGCTGAACCTGGCGTTCGTCGACCTGTCACGGAACATGTTGGAGGGGGATGCGTCGGTGCTGTTTGGGAGTGGGAAAGAGACGCAGAAGATACTACTTGGGAGGAACTCGCTGGCTTTTGATGTTGGGAAAGTGGGGTTGTCGAAGAACTTAGAGGCGTTGGATCTGAGGAACAATCGCATCTATGGGACGCTCCCTCGGGGACTCACTGCGCTCAAGTATTTGCACAAGCTGAACGTGAGCTACAATAGCCTGTGCGGGGAGATCCCACAGGGTGGCAACTTGCAACGGTTTGATGTGTCATCTTATGGGCATAACAAGTGCTTGTGTGGCTCTCCCCTTCCCGCCTGCAAGACTGGTACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	261551	262597	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013068.1	PF08263.7	LRRNT_2	37	76	4.50E-13
Glyur000183s00013068.1	PF00560.28	LRR_1	134	152	0.93
Glyur000183s00013068.1	PF00560.28	LRR_1	159	180	0.039
Glyur000183s00013068.1	PF00560.28	LRR_1	277	297	0.33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.413
SRR1783600	control	2.615
SRR1783602	moderate drought stress	8.798
SRR1811619	moderate drought stress	8.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.914
DRR006520	Root Summer glycyrrhizin high producing strain	3.197
DRR006521	Root Winter glycyrrhizin high producing strain	197.859
DRR006522	Root Winter glycyrrhizin high producing strain	191.933
DRR006523	Root Summer glycyrrhizin low producing strain	3.861
DRR006524	Root Summer glycyrrhizin low producing strain	4.133
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.394
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.149

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	235.269
SRR2868004	Drought Stress (root)	78.110
SRR2967015	Control (root)	73.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.686
SRR9715740	Leaf	9.555
SRR9715741	Leaf	9.444
SRR9715739	Root	22.189
SRR9715742	Root	14.439
SRR9715743	Root	14.428

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3041.393
SRR8749028	MeJA induced 9h	2384.185
SRR8749029	MeJA induced 9h	3275.842
SRR8749030	Uninduced	596.898
SRR8749031	Uninduced	685.020
SRR8749032	Uninduced	1623.746

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.869
SRR8400027	Control - Root	11.272