Gene detail

Gene detail information of Glyur000183s00013066.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20790.1	6.00E-148	Leucine-rich repeat protein kinase family protein
NR	XP_003524097.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g20450-like [Glycine max]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	7.00E-26	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|I1K2W3\|I1K2W3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25390.1}

Sequence

Transcript Sequence

>Glyur000183s00013066.1
ATGGCTACCATTTCAGTAACTTGCTTCCTCTTTGTTGTTCCTATAACGATAATAATTTCATGGTTATGGCCCACAACGCTATGTGCAACAGTGCTGGAAGACCTCAAAAACTTACACCAACCTCCAGATTTCAACACTACAATTGTGACCAACTGTCACAAGAACCCATCTCTTAGGTACTGCACTTCATCTCCCATGGACCTTGATGAAATATTCAAGTTCACTATCGTTGCTAGCCATCTGTGCAATGAGTCAAAGAACCCCAATTGCGTGGAGTCATTCCCCAAAATCGATCTTAGAAACCGCCCAAATGTTGCACCTCTTTATTTGTCATTTAGTTTCTTTTGGAAGTATTGCCCCTTGAGCATTATGTCCATTGATTTGTCCAATAATTCCATGAAGGGTAGTTTTCCAATCGATGTTCTAAACTGTACCCAAATCCAATCTCTTGATTTAAGCATCAATGAATTCTCTGGTGACATTCCAATTCAAGGTTTCTCTCCCCTCACCAACCTTACTTTTCTGAACCTTTCTTATAACTGTTTCTCAGAGAGTGAACTGTCTAATTCCCAGTTCTTCAAAAGGTTCAANTCTTCTAGTTTTCTTCATTCTGGTGCTGTCCCAGATCACAAAAGGTTTACAGTTATGGTTATCATTCTTCTAGTTGGCTTTCCCATCCTTGTGATTTTGATGGTAATTTGCTTGGGATGGCTTTGTTTCCAAAGACCTGATTTTCTGCCAAGAAAACTNCAAAGAAGGAGGAGATTTACACCAGCTATTCTGAAGGCAGCAACTGGTGGTTATTCGAATATGAATTTGGTTGGGAAGAGTGATGTTGTTCATATCTACAAAGGGGTCTTGAGAGATGGTACTAGAGTGAAGATTGAGATGTATTGGGATGATATATCAAGGGATGGATACCGGAGATTTGTTGANGAATGTAAGGTTCTGTTGGAGTTAAACCACAAGAACCTTGTTCGAGTTCTAGGGTGGTGTGGGGGCAGAAAATTCAGGGCTGTCATAACAGAATGGGCAGAAGAAGAGAATGTTGAAATGTGGTTATCAGGGTCAGCTCCACCATGGAATCATAGGCTGAAAGTGTTAATGGGAGTTGTAGAATGCATGCAATATCTGCAGGAGGAATGGCCTGAAGTTGATTATGACCTCAACACTAGTAGTGTTTTATTGTCAGATAATCTGGAACCATTGATTTCGAGGTTCAAAGTTGGAGATGAAAACAGCAATAGAAGAAACATATGTAAATTTGGAGTGTTTCTGCTAGAGATGATACTAAGCAGGAGGGTTCAAGAGGAGTTTGATGGAGGTGATATTGGGTTTATTAGGTACATGAGAACCCTTCACCCTGAAGACTTGCAGCAGATGATTGATGAGAGAATGGATGTCACTGAAACAACTTCACATCAAGTTAAGCAGGCTCTTTCCGTAGGATTATTGTGCATAGACCAATCAAATAGTGAGCAACCAAGCTTGGCCTTGATATTTAATGCTGTATCAAGAGCCTACAAGGCTAGCCTTGTTTTACCATCTGCAAATCATAGAATACTTCATAGAGTCAAGGGACACAAGCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	251934	253654	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.Other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013066.1	PF00560.28	LRR_1	171	192	0.81
Glyur000183s00013066.1	PF07714.12	Pkinase_Tyr	274	408	3.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.023
SRR1783600	control	0.023
SRR1783602	moderate drought stress	0.048
SRR1811619	moderate drought stress	0.048

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.320
DRR006520	Root Summer glycyrrhizin high producing strain	0.337
DRR006521	Root Winter glycyrrhizin high producing strain	0.069
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	0.486
DRR006524	Root Summer glycyrrhizin low producing strain	0.486
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.291
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.285
SRR2868004	Drought Stress (root)	0.248
SRR2967015	Control (root)	0.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.189
SRR9715740	Leaf	0.499
SRR9715741	Leaf	0.308
SRR9715739	Root	0.187
SRR9715742	Root	0.116
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.171
SRR8749028	MeJA induced 9h	0.245
SRR8749029	MeJA induced 9h	0.457
SRR8749030	Uninduced	0.368
SRR8749031	Uninduced	0.765
SRR8749032	Uninduced	1.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.307
SRR8400027	Control - Root	0.259