Gene detail information of Glyur000183s00013065 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09815.1 | 3.00E-31 | polymerase delta 4 |
| NR | XP_003524773.1 | 6.83E-56 | PREDICTED: DNA polymerase delta subunit 4-like [Glycine max] |
| trEMBL | tr|I1K2W4|I1K2W4_SOYBN | 3.00E-56 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G25400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00183 | 251015 | 251999 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000183s00013065.1 | PF04081.8 | DNA_pol_delta_4 | 13 | 109 | 6.70E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.368 |
| SRR1783600 | control | 24.397 |
| SRR1783602 | moderate drought stress | 23.653 |
| SRR1811619 | moderate drought stress | 23.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.894 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.305 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.129 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.331 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 95.897 |
| SRR2868004 | Drought Stress (root) | 73.516 |
| SRR2967015 | Control (root) | 77.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.390 |
| SRR9715740 | Leaf | 43.058 |
| SRR9715741 | Leaf | 47.911 |
| SRR9715739 | Root | 70.827 |
| SRR9715742 | Root | 30.884 |
| SRR9715743 | Root | 34.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.186 |
| SRR8749028 | MeJA induced 9h | 13.791 |
| SRR8749029 | MeJA induced 9h | 22.895 |
| SRR8749030 | Uninduced | 12.329 |
| SRR8749031 | Uninduced | 6.978 |
| SRR8749032 | Uninduced | 19.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 72.672 |
| SRR8400027 | Control - Root | 58.782 |