Gene detail

Gene detail information of Glyur000183s00013059

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44360.1	3.00E-134	FAD-binding Berberine family protein
NR	XP_007158998.1	0	hypothetical protein PHAVU_002G199600g [Phaseolus vulgaris]
COG	YP_008155704.1	2.00E-40	hypothetical protein SCE1572_46785 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q8GTB6\|THCAS_CANSA	5.00E-150	Tetrahydrocannabinolic acid synthase (Precursor)
trEMBL	tr\|V7CLB2\|V7CLB2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30992.1}

Sequence

Transcript Sequence

>Glyur000183s00013059.1
ATGGGTGAGGATCTGTTTTGGGCTATCAGAGGAGGTGGAGGAGCAAGCTTTGGAGTCATCAGAGCATGGAAGATAAGATTGGTTAATCCTGTTCCATCAAATGTGACAGTGTTCAGGGTTCCCAAGACATTGGAACAAAATGCAACCAAGCTTATTCACAAGTGGCAGCTTGTGGCAAATAAACTTGATGAGGACTTAACCATTAGGATCATCTTGGTGAGGGTAAATTCGAGTCAAACAAGGAAGCTAACAATACAAGCCACATTTGAATCTATGTTTCTTGGAGGTGTGGATAGGCTCCTTCCTTTGATGCAAGAGAGTTTCCCAAAGCTGGGATTGATTAGAGGAGACTGTACTGAGATGAGTTGGATTGAGTCAGTCCTCTACCTTGCTGGATTTACAAGTGATCAATCCCTTGAAGTTTTGCTCAATAGAACTCAAAGTGGTGTGTTGTTTTTGAAAGGGAAATCTGATTATGTAAGAGATCCTATTCCTGATGCTGGGNTAGAAGGGTTATGGCCAATGTTTTATCAAGATGAGGCCCAAGCTGCAGTGATGACACTCAATCCTTATGGAGGTAGAATGGATGAGATTNCGGAGTCTGAAATTCCATTCCCGCACAGAGCTGGAAACATTTACAAAATTCAGCACTTGGTTTATTGGCAAAAGGAAGGGGATGAGGTTGCACAAAGGCACATTAACTGGATTAGAAGATTGTACAATTATATGGAACCTTTTGTTTCAAAGTCTCCTAGAGCTGCATATGCCAATTATAGAGACCTTGACATTGGGGTGAATAACAACAATGGCTACACAAGCTATGGGCAAGCNAGCATTTGGGGTCTCAAGTATTTCAAGAACAACTTCAACAGATTGGCTAAAGTGAAGACCANGGTTGATCCTCTAAACTTCTTTAGAAATGAACAGAGAACTGGCCATAAATACTTGTCATCGCTCCGTTTGAAGGACAAGACAAAAATGACCACCTCAATTGTAAACTTGGTTTTCCTATTCATAACCATTTTCNTCACAATTTCCCCTGCAACTTCTAGCTATGCTGGCTTTGAGAAAGGTTTCCTTCAGTGTTTTCAGTCAGTTTTAGGAGCTAACAACAAAACAACTTCAGGAGTAATATTCACCAGAAGCAGTTCTTCTTATGAACCCCTTTTGCGGTCTTCTATAAGAAACTCCAGATTCTTGTCAAGTTCAGTCCCAAAACCAAACCTTATTGTTACTCCACACAACCTATTCCACATCCAATTAGCACTCCTCTGCTCAAAGAAAAGCAACTTGCAAGTAAGAGTTCGTAGTGGGGGGCATGACTATGAGGGCCTTTCCTACATCTCCCACGTTCCATTCCTCATCATTGATCTTCTCAACCTTAGGTCCATAAGCATTAACATGGAAGAAGAAAGCGCATGGGTTCAATCTGGTGCTACCCTTGGAGAACTCTACTATGCAATTGCAAATAGGAGTANGGTCCATGGTTTCCCAGCTGGGAGTTGTCCAACTGTTGGTGTTGGAGGACACTTGAGTGGAGGTGGGTTTGGTACCATTTTCAGAAAATATGGCCTAGCATCTGATAATGTAATTGATGCTCAAATTATAGATGTTAATGGGAAGGTACTGAATAATAGAACAATGATGGGGGAAGATCTCTTTTGGGCCATAAGAGGAGGAGGAGGGTCAAGCTTTGGTGTCATTACTGCTTGGAAAATAAAGCTTGTACCTGTTCCTTCTAAAGTTACAATTTTTGACGTCTCAAGGACCCTTGATCAAGGTGGGGGTAACCTTCTACACAAGTGGCAGAGTGTTGCTCCCAAGCTTCCAGCAGAACTTTTTCTACACACAGTTTTGGGAGTTACCAATTCAGCTTCTCATGGTGGTGGTGGAAAAACTGGGGTGGTTTCCTTCACAGGATTGTATCTTGGGGAAGCTGAGAAACTACTTCCTTTGATGCAGAACAGTTTTCCAGAGTTGGGTTTGCAAAGCATAAACAACTTCACCCAGATGACATGGATTCAATCTGTTCTCCATTTTGCAGGCTATTCAATAGATCAATCCTTGGAGGTGTTGCTTCAGAGAAACCAAACATCACCAGGTTCCAAAGCAAAATCTGACTATGTGAGGGAACCTATTCCTTTACCTGGCTTAGAAGGGATGTGGAAGATGCTGCTTTCCGGGAACTCTTCATGGTTCTTGATCCTGACACCTTACGGTGGAATAATGGATGAGATTTCAGAATCAGAAACACCATTCCCACATAGGAAGGGGAACTTATATGGAATCCAATATTCGGTGAGCACGGTTTCAAGTGAAGAAATGCCAAAGCATGTGGATTGGATAAGGAGACTGTATGCATATATGGCAACTTATGTGTCAAAGTGGCCAAGACGAGCNTATTTGAATTATAGAGACCTTGATTTGGGTGTGAACAGAGGGAACTCAGGGTATGAAGAAGCAAAATCATGGGGTTTGAAATATTTCAACAACAATTTTGAAAAGCTGGCCCGAGTGAAGGCTAGAGTTGATCCTGGAAACTTTTTCAGGAACGAGCAGAGCATTCCCCCTTTAATATTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	219298	230611	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013059.1	PF08031.7	BBE	254	309	2.10E-17
Glyur000183s00013059.1	PF01565.18	FAD_binding_4	407	543	5.60E-25
Glyur000183s00013059.1	PF08031.7	BBE	800	856	5.50E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.042
SRR1783600	control	0.043
SRR1783602	moderate drought stress	0.059
SRR1811619	moderate drought stress	0.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.084
DRR006520	Root Summer glycyrrhizin high producing strain	0.083
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.256
DRR006524	Root Summer glycyrrhizin low producing strain	0.296
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.935
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.921

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.305
SRR2868004	Drought Stress (root)	7.107
SRR2967015	Control (root)	3.698

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.258
SRR9715740	Leaf	6.508
SRR9715741	Leaf	4.088
SRR9715739	Root	0.000
SRR9715742	Root	0.259
SRR9715743	Root	0.239

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.065
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.025
SRR8749031	Uninduced	0.015
SRR8749032	Uninduced	0.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.670
SRR8400027	Control - Root	0.768