Gene detail

Gene detail information of Glyur000183s00013056

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G40240.1	2.00E-106	nodulin MtN21 /EamA-like transporter family protein
NR	KEH39875.1	0	nodulin MtN21/EamA-like transporter family protein [Medicago truncatula]
Swissprot	tr\|Q9FL08\|WTR42_ARATH	2.00E-130	WAT1-related protein At5g40240
trEMBL	tr\|A0A072VP39\|A0A072VP39_MEDTR	0	Nodulin MtN21/EamA-like transporter family protein {ECO:0000313\|EMBL:KEH39875.1}

Sequence

Transcript Sequence

>Glyur000183s00013056.1
CAAAGATATAAGACAGAGACTAATATATAGTTTAGAAAAATTATTACCAAGATTCCCAAATCAAATGCTGAGCAAACAGACAAGACAACAATAGCTTTTAAATGAAATATACAATTACAAATGCAACACACACTGAAATTGAGAAAAACTGAACCAGAGAGAAAGGAGAGAGAGAAAGAGAGATGACGGGGAGACATTGTTACGAGGACGTGATTCCATTCACAGTAATGGTTGCAATAGAGTGCTCAAACGTTGGTGNCAACGTTCTATTCAAAGCAGCTACTGAGAAGGGGTTGAGTTACTATGTCTTCATCGCTTATTCATTCGCTGTCTCAACTCTTGTTCTCCTTTTGCCTCTCCCCTTCTTCATCCGATGGTCAAGAGGGCTTCCTCCGTTGAAGGTGTCTCTGATGTTCAGAATTTTCCTCCTTGGAGTAATTGGACTCATCTCTCAGCTTTGTGGATATAAAGGGCTTCAATACAGTTCACCGACTCTTGCATCAGCTCTTGCCAACCTTATACCGGCTTTTACCTTCATCCTAGCTGTCTTTTTCAGGATGGAGAAGGTAGCTTTAAGAAGCAAGAGCAGTCAGGCCAAAATCTTAGGCTCTACGGTATCGATATTAGGTGCACTCATAGTTGTTCTCTACAAGGGCCCAATAGTCTTACCCTCATCATCTCCACAAATACCACCTATTGTTAATTCTCCAATGGGCTCAACATCACAAACGAATTGGGTTCTTGGCGGATCTCTACTTGTCATTGAGTTTCTCCTAGTCCCAATCTGGTACATTGTTCAGACCAATGTTATAAAAGAATATCCAGCAGAGGTTATTGTGGTATTCTTATACAACCTGTGTGGGGCACTCATATCTGCACCAGTATGCTTACTATTAGAAGCAAATTTAAGTGCTTGGAAGATAAATCCTGATATAACATTGATCTCCATTATATATTCGGGATTATTTTGCACAGGCCTAAGTTGTCTTGTCCACACCTGGGGCCTCCATGTTAAAGGCCCTGTATATATATCACTCTTTAAGCCTCTGTCAATAGTTATTGCTGCTGCTTTTAGTGCCATGTTCCTCGGTGATGCAGTGTATTTGGGGACTGTAGTTGGAGCAGTAATACTATCATTCGGGTTTTATGCTGTTATATGGGGGAAAGCCAAAGAAGAACTGAATGAGGACTTTGATATAGGTAGTAGAAATCGACCTCCATCCAATTGTAAGACTCCTCTGTTGCATNGCTCCAACGGGAAAGATAAAGGAGGAATCACGTATAACAACGATTGTTGATTAAATATCCAAATTATGAAAGCAAAAAGAGAGTTATCAATTTAGGAATATGGAAAAAATATACAGTTAAGTAACCCTGCTTTTTTCCATCATGCAATGCTTTGTAATAATACATNCATGATACATTTCTTTGAGAAATCCAAAAACATTGAGAGGAAGTCTCACGATTTATTGAGAATTAATGTGGCCTCCAAAAGACTGCCGGCNTACCATTGCTTAGAATTCTTTTTTTTACCTCCTTGATCAATTCTTNTATCATATTACAATAGAAACCAACAATAAGTAGAAGCAAGAGCAATGTCATGCATCTAAAATCGCACAATTGGAATTGGGGACCAAAATTGTATACGAAGATCAAAAGTGCAATTAAGTCATAGAATGAAGCTTATGCTTGTGAGTAGGAAATTTGCATGGAAATGGGGTGGATTGATTCTGTGCTTTGATGGGACAATTTTAATTATGGTTCCTCATTGGATTCACCGCTTTGCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	212805	216123	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013056.1	PF00892.15	EamA	28	154	2.80E-10
Glyur000183s00013056.1	PF00892.15	EamA	201	324	3.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.418
SRR1783600	control	14.413
SRR1783602	moderate drought stress	5.439
SRR1811619	moderate drought stress	5.407

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.479
DRR006520	Root Summer glycyrrhizin high producing strain	6.487
DRR006521	Root Winter glycyrrhizin high producing strain	8.639
DRR006522	Root Winter glycyrrhizin high producing strain	8.451
DRR006523	Root Summer glycyrrhizin low producing strain	4.063
DRR006524	Root Summer glycyrrhizin low producing strain	3.808
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.242
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.205

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	78.864
SRR2868004	Drought Stress (root)	80.947
SRR2967015	Control (root)	66.719

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.990
SRR9715740	Leaf	6.236
SRR9715741	Leaf	8.265
SRR9715739	Root	0.918
SRR9715742	Root	1.328
SRR9715743	Root	1.931

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.182
SRR8749028	MeJA induced 9h	0.075
SRR8749029	MeJA induced 9h	0.560
SRR8749030	Uninduced	0.103
SRR8749031	Uninduced	0.356
SRR8749032	Uninduced	0.064

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.384
SRR8400027	Control - Root	25.643