Gene detail

Gene detail information of Glyur000183s00013053

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G03880.1	0	Pentatricopeptide repeat (PPR) superfamily protein
NR	XP_004504725.1	0	PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Cicer arietinum]
COG	YP_001698653.1	9.00E-32	reticuline oxidase [Lysinibacillus sphaericus C3-41]
Swissprot	tr\|Q9SI53\|PP147_ARATH	0	Pentatricopeptide repeat-containing protein At2g03880, mitochondrial (Precursor)
trEMBL	tr\|I1K2X3\|I1K2X3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25530.1}

Sequence

Transcript Sequence

>Glyur000183s00013053.1
ATGTCTGCAATTGCATTTGTAGCATCCCTTGTTGTCCCAATCTTTGTACTCCACATTCTAATGTCAATGTCTGCATCAAATCCTCTCCCAGGAGATACCCTTCTCCAGTGCCTCTCTCTCAATTCTGAACCTTCTTCTCCCCCAATCTCTGAACTGACCTATTTCCCCAACAACCCTTCATATTCACCCGTCTTGGGTTCCTACATCAGAAACCTGAGATTCAACTCATCCACAACTCCAAAACCAGCCTTCATTGTGACCCCAACTCACGTGTCCCACNTCCAATCCTCAATCATCTGCTGCAAAAGGTTCGGGCTTGAAATCAGAATAAGGAGTGGTGGCCATGACTATGATGGCCTTTCANACAAATCAGCATCATCACAAGCCCCATTCATTGTTCTGGACATGTTCTTGCTCAGATCAGTGGATGTCAACTTGAAGGATGAGACTGTGTGGGTTGAATCAGGTGCAACAATTGGGGAACTCTACTATAGGATTGCAGAGAAGAGCAAGATCCATGGTTTCCCAGCTGGGGTGTGCCCCACTGTCGGTGTTGGAGGACACTTCAGTGGTGGAGGCTATGGGAACATGATGAGAAGTTTTGGCCTCTCTGTGGATAATATTCTGGATGCTCAAATTGTGGATGCTGATGGAAGAGTCCTTGATAGGAATTCAATGGGGGAAGACCTTTTCTGGGCTATTAGAGGAGGTGGGGGAGCTAGTTTTGGGGTCATAGTTTCTTGGAAGATTAAGTTGGTCCCTGTGCCTGAGATTGTCACTGTCTTTAGAGTTGAGAAAACATTGGAACAAGGTGCCACTGATATTGTTCATAGGTGGCAATATGTTGCTGATAAGATACACCATGGGTTGTTTATTAGAGTAGTTCTTGGTCCTGTGAAGAGAAATGGTAAGAAGACAGTGAGGGCTAAATTCAATGCCTTGTTTCTTGGTAATGCACAACAGCTGCTTGATGTAATGACTGAGAGCTTCCCTGAACTGGGTTTGATTGGTGAGCAGTGCATTGAAATGAGCTGGATAGATTCGGTGTTGTTTTGGTATAACTATCCAGTGGGGACCTCAGCTGATATTTTGCTTGAAAGGCATCCATCACCAGAGAAATTCTTGAAGAGGAAATCAGATTATGTGCAACACCCCATTCCCAAAACTGACCTTGAAGGTGTATGGAAGAAGATGATGGAACTGGGAAAGCCTGGTCTGACATTGAATCCTTATGGTGGGAAAATGAGTGAGATCTCTGAGGTGGAAACACCATTTCCACACAGAGCTGGTAACATATATAAGATTCAGTACTCCTTAAGTTGGAAAGAGGAAGGTAATGATGTTGCAAATCGGTATTTGGATCTGATTCGAAAGCTCTATGATTACATGACACCTTATGTGTCAAAGTCACCTAGAAGTTCATATCTGAACTACAGAGATGTTGATATAGGTGTCAATGGAGCTGGAAATGCTAGTTATGAGGAAGCTAGTATTTGGGGTAACAAGTATTTCAAGACAAACTTTGATAGGCTTGTAGAGGTGAAGACCGCGATAGATCCAAGCAATTTTTTCAGATATGAGCAGAGTATCCCATCACTAGCATTTGGGAGGACTAAGTTGCTGCNAACAACTTGGTCGCGTCGTTGTTCATGTGTTGCGTCCCCACCAAGCGTGGCCCCAGAAACTTCTTTACTACTCAACCTCTGCCACCAGAGAGACCTTCCCGGAGCCATGCATGCCTTGGATGCCATGGAAAGACGCGGAGTCTGGGCCGATGCTATAACGTATTCTGAGCTCATCAAGTGTTGCTTGGCTCATANGGCCGTCAGGGAAGGCAAGCGCGTTCATCGCCACATATTCTCAAATGGGTATCAGCCAAAAACGTTCTTGATCAACACTCTCCTCAACATGTACGTGAAATTCAACCTCTTGGAAGAAGCACAGATACTGTTTGATAAAATGCCTGAACGGAACGTTGTTTCGTGGACAACTTTGATATCTGCTTACTCTTTTGCTAAGCTCAACGATCGAGCCATGAAGNTTTTTACTTTCATGCTTAGGGAAGGTGTCATGCCTAACATGTATACTTACTCGTCTGTTTTGAGAGCCTGTGAGAGGCTATCTGATCTCAAACAGCTGCATTCTAGCATAGTGAAAGTGGGGTTGGAGTCTGATGTCTTTGTTCGGAGCGCGCTTATCGATGTTTACTCCAAGTTGGGTGAGTTGTTGGAGGCTCTAGGTGTTTTTCGTGAGATGGTGACCGGGGACTCTGTTGTTTGGAACTCCATTATTGCTGCTTTTGCTCAGCACAGTGATGGGGATGATGCTTTATACCTCTACAAGAGTATGAGGAGAGCAGGCTTTTTGGCTGATCAGTCAACACTGACTAGTGTTTTGAGGGCATGTACTAGTTTGTCATTGTTAGAGTTAGGGAGGCAGGCACATGTACATGTGCTGAAGTTTGATCAAGATCTTATTCTTAACAATGCACTTTTAGATATGTATTGTAAGTGTGGTAGTTTGGAAGATGCAAAGTTCATTTTCAATCGGATGTCCGAGAAGGATGTTATCTCCTGGAGCACCATGATTGCTGGATTAGCCCAAAATGGTTTCAGCATGGAGGCACTCAATTTATTTGATTCAATGAAAGTCTCGGGTCCAAGACCAAACTATATCACAATTCTTGGGGTTCTGTTTGCGTGTAGTCATGCAGGGCTAGTAGATGAAGGTTGGTACTATTTTCGATCTATGAAGAACCTTTATGGGATAGATCCTGGAAGAGAACACTATGGTTGCATGCTTGATCTTCTTGGAAGAGCAGGGAAGCTTGATGAAATGGTTAAGTTAATTCGTGAAATTTGTGAGCCAGATATTGTGATGTGGAGGACTTTGCTTGATGCATGCAGGGCCCATCGGAATGTGGATTTAGCCACATATGCTGCTAAGAAGATTCTAAAGTTGGATCCACAGGACACAGGAGCCTATGTATTGTTATCTAATATTTATGCAAATTCAAAAAGGTGGAATGATGTTGCAAAAGTTCGGAGGACTATGAGAGCAAGGGGGATAAGGAAAGAACCTGGATGTAGCTGGATTGAAGTCAATAAGCAAATACATGCTTTTATTTTGGGAGATAAATCTCATCCTCAAATAGATGAGATCAATAGACAGTTGAGCCAATTTATTTGTAGACTAACTGCAGCTGGTTATGTTCCTGACACAAATTTTGTGCTACAAGATCTTGAAGGGGAACAAAGAGAAGACTCACTTCGATACCACAGTGAGAAACTAGCAATTGTTTTTGGCATCATGAGCTTTCCAAGGGAGAAAACGATTAGAATATGGAAGAACCTAAAGATATGTGGAGATTGTCATATATTCGCAAAACTTATAGCAAAGCTAGAGCAACGACACATTGTAATCAGAGACCCCATTCGGTACCATCATTTTCAAGATGGAGTCTGCTCATGTGGTGACTATTGGTAG

Protein Sequence

>Glyur000183s00013053.1
MSAIAFVASLVVPIFVLHILMSMSASNPLPGDTLLQCLSLNSEPSSPPISELTYFPNNPSYSPVLGSYIRNLRFNSSTTPKPAFIVTPTHVSHXQSSIICCKRFGLEIRIRSGGHDYDGLSXKSASSQAPFIVLDMFLLRSVDVNLKDETVWVESGATIGELYYRIAEKSKIHGFPAGVCPTVGVGGHFSGGGYGNMMRSFGLSVDNILDAQIVDADGRVLDRNSMGEDLFWAIRGGGGASFGVIVSWKIKLVPVPEIVTVFRVEKTLEQGATDIVHRWQYVADKIHHGLFIRVVLGPVKRNGKKTVRAKFNALFLGNAQQLLDVMTESFPELGLIGEQCIEMSWIDSVLFWYNYPVGTSADILLERHPSPEKFLKRKSDYVQHPIPKTDLEGVWKKMMELGKPGLTLNPYGGKMSEISEVETPFPHRAGNIYKIQYSLSWKEEGNDVANRYLDLIRKLYDYMTPYVSKSPRSSYLNYRDVDIGVNGAGNASYEEASIWGNKYFKTNFDRLVEVKTAIDPSNFFRYEQSIPSLAFGRTKLLXTTWSRRCSCVASPPSVAPETSLLLNLCHQRDLPGAMHALDAMERRGVWADAITYSELIKCCLAHXAVREGKRVHRHIFSNGYQPKTFLINTLLNMYVKFNLLEEAQILFDKMPERNVVSWTTLISAYSFAKLNDRAMKXFTFMLREGVMPNMYTYSSVLRACERLSDLKQLHSSIVKVGLESDVFVRSALIDVYSKLGELLEALGVFREMVTGDSVVWNSIIAAFAQHSDGDDALYLYKSMRRAGFLADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMSEKDVISWSTMIAGLAQNGFSMEALNLFDSMKVSGPRPNYITILGVLFACSHAGLVDEGWYYFRSMKNLYGIDPGREHYGCMLDLLGRAGKLDEMVKLIREICEPDIVMWRTLLDACRAHRNVDLATYAAKKILKLDPQDTGAYVLLSNIYANSKRWNDVAKVRRTMRARGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDEINRQLSQFICRLTAAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPREKTIRIWKNLKICGDCHIFAKLIAKLEQRHIVIRDPIRYHHFQDGVCSCGDYW

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	196731	202268	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0005515 protein binding

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013053.1	PF01565.18	FAD_binding_4	82	222	8.60E-26
Glyur000183s00013053.1	PF08031.7	BBE	474	531	9.50E-22
Glyur000183s00013053.1	PF13041.1	PPR_2	658	704	2.30E-10
Glyur000183s00013053.1	PF01535.15	PPR	730	753	0.00029
Glyur000183s00013053.1	PF13041.1	PPR_2	756	802	1.20E-07
Glyur000183s00013053.1	PF13041.1	PPR_2	854	894	2.80E-07
Glyur000183s00013053.1	PF01535.15	PPR	929	955	0.022
Glyur000183s00013053.1	PF14432.1	DYW_deaminase	1029	1151	5.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.057
SRR1783600	control	1.094
SRR1783602	moderate drought stress	0.805
SRR1811619	moderate drought stress	0.919

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.195
DRR006520	Root Summer glycyrrhizin high producing strain	1.144
DRR006521	Root Winter glycyrrhizin high producing strain	0.940
DRR006522	Root Winter glycyrrhizin high producing strain	0.961
DRR006523	Root Summer glycyrrhizin low producing strain	1.126
DRR006524	Root Summer glycyrrhizin low producing strain	1.064
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.931
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.798
SRR2868004	Drought Stress (root)	2.170
SRR2967015	Control (root)	2.990

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.772
SRR9715740	Leaf	2.196
SRR9715741	Leaf	1.847
SRR9715739	Root	0.895
SRR9715742	Root	1.784
SRR9715743	Root	1.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.326
SRR8749028	MeJA induced 9h	8.146
SRR8749029	MeJA induced 9h	5.915
SRR8749030	Uninduced	3.151
SRR8749031	Uninduced	2.799
SRR8749032	Uninduced	1.657

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.340
SRR8400027	Control - Root	1.975