Gene detail

Gene detail information of Glyur000183s00013051

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20840.1	0	FAD-binding Berberine family protein
NR	KEH31331.1	0	FAD-binding berberine family protein [Medicago truncatula]
COG	YP_004969746.1	1.00E-33	FAD/FMN-dependent dehydrogenase [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|Q9SVG4\|RETOL_ARATH	0	Reticuline oxidase-like protein (Precursor)
trEMBL	tr\|A0A072UPP4\|A0A072UPP4_MEDTR	0	FAD-binding berberine family protein {ECO:0000313\|EMBL:KEH31331.1}

Sequence

Transcript Sequence

>Glyur000183s00013051.1
TTCGCAATAATGTGTCCCAGAAAGAAATGCCGTATTAAAAGGGTGAAACAAGTAGAGCTGACTACGGTCTACGGGTCCTATAAGTTGGTCTTCTTTCTCTCTCTTTGACCGATATCTAAAACTGCTTTTGACAATTCTGACGTAGTTGTCAAATGTCGGGTACCTTCAAGAATGGGAAAAAAAAACGAGTATTTTCCAGAAGAAACTGTTTAAACCCCCAGTTACCCTTAACACGGTACACCCCAATTATGCCAGTGTCATCAAACAAATGGGAAAATCTAGTTCTTTGGCTCTTTGTTCTGGGGTTCTTCTTCTTCTCCTTAATGTCTCTATTTCAGCGGCAGCACCAACATCAGAGTCAGTATACAGCTCTTTCCTTCACTGCTTAACAAACCACAAAGAACTTTCAGACCAAGTCTCCAACATAGTCTTTTCTCAGACCAATGCTTCCTTTTCTTCTGTTCTCCAAGCCTATATTCGCAATGCCCGATTCAACACAACTTCAACCCCAAAACCCTTAATAATCGTCACTCCTCTGCATGAATCCCACGTCCAAGGTGCTGTGGTTTGCGCTAAAAGCATTGGGATTCAACTCAAAATCAGGAGCGGTGGCCATGACTTTGAGGGTATCTCATATGTCTCCAATCAACCCTTCATCATCCTTGACATGTCCCAATTCAGGAACGTGACTGTGGATATACAAAACGAGGTTGTTGTGGCTCAAGCCGGTGCCACTGTTGGAGAGGTTTGTTATAGTATTTGGGAGAAGAGTAAAGTTCATGGCTTTCCTGTTGGGGTTTGTCCAACTGTAGGTGTTGGTGGCCATTTGAGTGGAGGAGGGTATGGTAACATGATAAGAAAACATGGGCTATCTGTTGATCATGTTATTGATGCTCAAATTGTTGATGTCAATGGTAGGATTCTCAACAAGGAAGCTATGGGGGAAGACCTTTTTTGGGCTATTAGGGGTGGAGGAGGAGCAAGCTTTGGAGTCATCTTATCATACACTGTTAAGTTGGTTCCTGTACCAGAGAAAGTAACAGTTTTTCAGGTTGCAAAGACTTTGGATTTGGAAGAGAAGGTCACTGAGTTTGTCTTCCGGTGGCAGCAGGTTGCGCCGCGAACGGATGATAGGCTTTTCATGAGGCTGCTCTTGCAGCCTGTGAGTTCTAAGGTTGTGAAAGGGCAGAAAACCATTAGAGCCACCGTTATGGCTCTTTTTCTTGGAGGGGCTGATGAAGTTGTCACGCTGTTGGGGAAGGAGTTTCCTGTTCTAGGTTTAAACACGGAAAGCTGTTCTGAAATGAGTTGGATTGATTCTGTGCTTTGGTGGGCTAATTTTGGCAATGACACAAAACCAGATGTGCTGCTTGACAGGAACATCAACTCGGCGAGTTTTCTCAAGAGGAAATCTGATTATGTGCAGAACCCGATTTCAAGAGATGGGTTGGAAGGGATATGGAAGGAGATGATTGAATTGGGAAAAACAGGATTTGTTTTCAACCCTTANGGAGGAAAAATGAATGAGATCCCATCAGATGCTACGCCGTTTCCTCACCGNGCTGGGAATCTGTTCAAGATTCAGTACTCAGTGAATTGGGAGGAACCAGGAGCTGCTGTGGAAAACAATTTCACAAGTCAGGTTAGAAGGCTATATGATTACATGACCCCATTTGTGTCCAATAGCCCAAGAAGAGCCTTCTTAAATTACAGGGACCTTGATATTGGTACCAACAGTTTTGGAAAGAATAGTTATGAAGNAGGAGTTGTTTATGGAGTCAAGTACTTCAATAACAACTTTGAGAGGTTGGTNAAGATCAAGACTGCGGTTGATCCAGAAAACTTTTTCAGGAATGAACAGAGTATTCCAACTCATCCGGGATTGGACTCNGGTGCCGGTAAATCTGATGCTGGCAAATTGTTACTTTCCAGCCTGTATAGGAAACTGATGGTAAATGTGGTAATGGTATGGTTGCTCATCCTTGAATTCCGTACCGTCCACCACCCTTGTACTGATCTTTCCAGAATTGAAATGGAGAACTCAAATCCTCTACCTTTTCTTTTTGTTTGTGTTCTTCTTCTTCTTCTTCTTCATGTCTCTAACTCCCTGACACTAACACCCCCATCAAGAGAGACCGTGTATGCNACATTTCTTCAGTGTCTTAAAAGCCACACAACAAACCCACCAGATCAAATTTCCAACATAGTCTATACCCAAACCAACACATCATACACCTCAGTTTTCCAAGCCTTTGTTCGAAATGCCAGGTTCAACAACCCCTCCACCCCAAAACCATTACTCATTGTCACCCCTCTGCATGAACACCAAGTACAAGCCACAGTGNTTTGCGCCAAAAGCATCAGTGTTCAACTCAAAATCAGAAGTGGGGGCCATGATTTCGAAGGCATCTCATATGTCTCCGAGGTACCCTTTATCATCCTTGACATGTTCAATTTTCATAATGTCACTGTGGACATACAAAACGAGATTGCTGTGATTCAATCCGGTGCAAGTCTTGGACAAGTTTATTATAGGATTTGGGAGAAGAGTAAAGTTCATGGCTTTCCTGCAGGGGTTTGTCCAACTGTAGGTGTTGGTGGCCACTTGAGTGGAGGAGGGTATGGTAACATGTTGAGAAAACATGGGTTATCTGTTGACAATGTTGTTGATGCTAAAATTGTTGATGTCAAGGGTAGGATTCTTGACAAGAACACTATGGGGNGAGATCTTTTTTGGGCTATTAGAGGAGGTGGAGGAGCAAGTTTTGGAGTCATATTATCATACACAGTTAAGCTAGTTCCAGTACCAGAAAAAGTTACACTTTTTCAAGTTGAAAGGACTTTGGAGCAGAATGTCACTGATCTTGTTTTCCAGTGGCAGCAAGTTGCTCCACACACAGATGATAGGCTTTTCATGAGGCTTCTCTTACAGCCAGAAAGTTCCAAGGTTGTGAAGGGGAAAAAAACCATCAGAGCCACTATTGATGCTTTGTTTCTTGGAGGGGCTGATGAACTTGTCACAATTTTGGCAAAGGAGTTTCCTTTGCTTGGATTGAAGAAGGAAACTTGCATGGAAATGGGTTGGATTGATTCTGTGCTTTGGTGGGCTAATTTCAATGATGGCTCCTCATTACATACACTGCTTGACAGAAACCATTACTCAGTACACTTCAACAAAAGGAAATCTGATTATGTTCAGACCCCAATTCCCAAAGATGGGTTGAATTGGATATTTAAGAAGATGATTGAGCTGGGAAAAGCTGCTCTTGTTTTCAACCCTTATGGAGGGAAAATGAATGAGNTCCCTTCTGATGCGACACCNTTTCCTCACCGTGCAGGGAATCTGTACAAGATTCAGTACACTGTGACTTGGCAGGAACCAGGAGCNGCTGCAGACAAGGCTTTTATGAGTCAGGTTAGGATGCTATACAGTTACATGACACCATTTGTGTCTAAGAATCCAAGGAGTGCCTATTTNAACTATAGGGACCTTGATATTGGTATCAATAGCCATGGGAAGGATAGTTACAGAGATGGAGAGGTTTATGGTGTTAAGTACTTCAATAGAAATTTTGAGAGGTTGGTTAAGGTTAAGACTGCAATTGATCCAGNGAACTTTTTCTGGAATGAACAGAGTATCCCAACACTTCCAAGTAAGGCATAG

Protein Sequence

>Glyur000183s00013051.1
MGKSSSLALCSGVLLLLLNVSISAAAPTSESVYSSFLHCLTNHKELSDQVSNIVFSQTNASFSSVLQAYIRNARFNTTSTPKPLIIVTPLHESHVQGAVVCAKSIGIQLKIRSGGHDFEGISYVSNQPFIILDMSQFRNVTVDIQNEVVVAQAGATVGEVCYSIWEKSKVHGFPVGVCPTVGVGGHLSGGGYGNMIRKHGLSVDHVIDAQIVDVNGRILNKEAMGEDLFWAIRGGGGASFGVILSYTVKLVPVPEKVTVFQVAKTLDLEEKVTEFVFRWQQVAPRTDDRLFMRLLLQPVSSKVVKGQKTIRATVMALFLGGADEVVTLLGKEFPVLGLNTESCSEMSWIDSVLWWANFGNDTKPDVLLDRNINSASFLKRKSDYVQNPISRDGLEGIWKEMIELGKTGFVFNPXGGKMNEIPSDATPFPHRAGNLFKIQYSVNWEEPGAAVENNFTSQVRRLYDYMTPFVSNSPRRAFLNYRDLDIGTNSFGKNSYEXGVVYGVKYFNNNFERLVKIKTAVDPENFFRNEQSIPTHPGLDSGAGKSDAGKLLLSSLYRKLMVNVVMVWLLILEFRTVHHPCTDLSRIEMENSNPLPFLFVCVLLLLLLHVSNSLTLTPPSRETVYATFLQCLKSHTTNPPDQISNIVYTQTNTSYTSVFQAFVRNARFNNPSTPKPLLIVTPLHEHQVQATVXCAKSISVQLKIRSGGHDFEGISYVSEVPFIILDMFNFHNVTVDIQNEIAVIQSGASLGQVYYRIWEKSKVHGFPAGVCPTVGVGGHLSGGGYGNMLRKHGLSVDNVVDAKIVDVKGRILDKNTMGXDLFWAIRGGGGASFGVILSYTVKLVPVPEKVTLFQVERTLEQNVTDLVFQWQQVAPHTDDRLFMRLLLQPESSKVVKGKKTIRATIDALFLGGADELVTILAKEFPLLGLKKETCMEMGWIDSVLWWANFNDGSSLHTLLDRNHYSVHFNKRKSDYVQTPIPKDGLNWIFKKMIELGKAALVFNPYGGKMNEXPSDATPFPHRAGNLYKIQYTVTWQEPGAAADKAFMSQVRMLYSYMTPFVSKNPRSAYXNYRDLDIGINSHGKDSYRDGEVYGVKYFNRNFERLVKVKTAIDPXNFFWNEQSIPTLPSKA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	188582	195457	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013051.1	PF01565.18	FAD_binding_4	83	219	4.50E-25
Glyur000183s00013051.1	PF08031.7	BBE	477	534	1.30E-19
Glyur000183s00013051.1	PF01565.18	FAD_binding_4	676	813	1.20E-24
Glyur000183s00013051.1	PF08031.7	BBE	1068	1125	1.70E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.839
SRR1783600	control	12.934
SRR1783602	moderate drought stress	10.495
SRR1811619	moderate drought stress	10.351

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.328
DRR006520	Root Summer glycyrrhizin high producing strain	7.367
DRR006521	Root Winter glycyrrhizin high producing strain	0.893
DRR006522	Root Winter glycyrrhizin high producing strain	0.900
DRR006523	Root Summer glycyrrhizin low producing strain	6.600
DRR006524	Root Summer glycyrrhizin low producing strain	6.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.532
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.561

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.486
SRR2868004	Drought Stress (root)	3.927
SRR2967015	Control (root)	4.972

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.092
SRR9715740	Leaf	3.663
SRR9715741	Leaf	2.914
SRR9715739	Root	3.827
SRR9715742	Root	6.775
SRR9715743	Root	6.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.569
SRR8749028	MeJA induced 9h	0.279
SRR8749029	MeJA induced 9h	0.297
SRR8749030	Uninduced	0.122
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.792
SRR8400027	Control - Root	11.423