Gene detail

Gene detail information of Glyur000183s00013050.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30760.1	0	FAD-binding Berberine family protein
NR	XP_003524780.1	0	PREDICTED: tetrahydrocannabinolic acid synthase-like [Glycine max]
COG	YP_008155704.1	2.00E-36	hypothetical protein SCE1572_46785 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q8GTB6\|THCAS_CANSA	4.00E-163	Tetrahydrocannabinolic acid synthase (Precursor)
trEMBL	tr\|I1K2X6\|I1K2X6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25580.1}

Sequence

Transcript Sequence

>Glyur000183s00013050.1
ATGGTGTCACCAATCTCACTACCCTGGCCAATTTTAGTCCTCCTATTATTATCATCATCATTTTCATTGCCACTGCCAGTTTCAGCTTCAATTCAAGAAAGTTTTATCCAATGTCTAAACTTGAATTCGGACAGAACATTTCCATTCCATACAACAATTTACACTCCAAACGATGCTTCATTCATCACCATCCTTGATTCCTCAGCACAGAACCTAAGGTGTTTGTTGCCTTCAGCACCAAAACCCGAGTTCATATTCACACCCTCCCGTGATTCCCATGTCCAAGCAGCTGTAATTTGCTCCAAGAAACTTGGGATCCATCTGAGANTACGAAGTGGTGGCCATGACTATGAAGGGGTCTCCTATGTTTCTGAAATTGAAACCCCTTTCATGGTTGTTGACTTGGTCAAACTCCGTGGCATAAACGTTGACATTAAAACCAACACTGCTTGGGTTCAAGCTGGTGCCACAATTGGTGAGGTCTATTACAGAATATATGAGAAAAGTTCAGTTCTTGGGTTCCCTGCAGGGCTTTGCACAAGCTTAGGTGTTGGTGGGCACATAACAGGAGGTGCATATGGAACCATGATGAGAAAGTATGGTCTTGGTGTTGATAATGTCCTAGATGCTCAAATTGTTGATGCCAATGGCAAAATTCTTAACAGGGCAGCCATGGGGGAGGACCTATTCTGGGCAATCAGAGGAGGTGGAGGTGGAAGCTTTGGTATCCTTCTTTGGTGGAAGATAAAGCTGGTTCCTGTGCCACCAACTGTGACAGTTTTCACAGTTACCAAGAGCCTAGAGCAAGGTGCAACCAAGCTTCTCCATAGGTGGCAGGAAGTGGCACCCTATATTGATGAGAATCTCTTCATCAGGGTCATCATTCAACCAGCTAGTGGTGGTGGAAACAAAACTCAGAGAACCATCACAACTTCTTACAATGCTGTCTTCCTTGGTGAGGCCAGAAGGCTCCTCCAAGTTATGAAGACAAGCTTTCCTGAATTGGGCTTAACAATGAAGGATTGCCAGGAAACTAGCTGGATCAAATCTGTGCTTTATATTGCAGGCTTTCCAAGTGGTACACCACCTGAAGTTCTGCTTAAAGGAAAGCCAACATTCAAGAACTCCTTCAAAGCAAAATCAGATTTTGTGAGAGAACCGATACCAGAAACCGGGATTGAGGGATTGTGGCAAAGATTGCTGATTGAAGACAGTCCCTTGATGATTTGGAACCCATACGGTGGAAGGATGAGTCAATTCTCAGAATCTGACACCCCATTTCCCCACAGAAATGGAACACTGTACAAAATCCAGTACCTTTCTTTGTGGCAAGATGGAGACAAGAATGCTGCAAAGCATATAGATTGGATTAGGAAGCTTTACAACTACATGACTCCTTATGTGTCTAACTTCCCAAGGCAAGCATATGTGAATTACCGGGATCTTGATTTGGGAATGAACTCCAAGAACAGCACAAGTTATATACAAGCAAGTGCTTGGGGTTATAGGTATTTCAAGGATAATTTTAACAGGTTGGTGAAGATAAAGACCAGAGTGGATCCTGAAAACGTTTTCAGGCATGAACAGAGCATCCCACCACTTCCAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	174950	176560	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	AA7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013050.1	PF01565.18	FAD_binding_4	82	221	2.70E-27
Glyur000183s00013050.1	PF08031.7	BBE	475	532	2.20E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.288
SRR1783600	control	52.421
SRR1783602	moderate drought stress	100.361
SRR1811619	moderate drought stress	100.758

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	59.199
DRR006520	Root Summer glycyrrhizin high producing strain	57.604
DRR006521	Root Winter glycyrrhizin high producing strain	1.481
DRR006522	Root Winter glycyrrhizin high producing strain	1.722
DRR006523	Root Summer glycyrrhizin low producing strain	18.653
DRR006524	Root Summer glycyrrhizin low producing strain	18.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.382
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.315

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.789
SRR2868004	Drought Stress (root)	63.555
SRR2967015	Control (root)	33.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.503
SRR9715740	Leaf	12.974
SRR9715741	Leaf	11.206
SRR9715739	Root	63.093
SRR9715742	Root	191.647
SRR9715743	Root	162.781

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.743
SRR8749028	MeJA induced 9h	3.704
SRR8749029	MeJA induced 9h	2.092
SRR8749030	Uninduced	2.838
SRR8749031	Uninduced	0.895
SRR8749032	Uninduced	1.255

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	102.418
SRR8400027	Control - Root	107.059