Gene detail

Gene detail information of Glyur000183s00013048

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34770.1	6.00E-83	fatty acid hydroxylase 1
NR	AFK47890.1	5.17E-153	unknown [Lotus japonicus]
COG	YP_003091961.1	5.00E-44	fatty acid hydroxylase [Pedobacter heparinus DSM 2366]
Swissprot	tr\|O48916\|FAH1_ARATH	4.00E-120	Fatty acid 2-hydroxylase 1
trEMBL	tr\|I3T5U8\|I3T5U8_LOTJA	2.00E-153	Uncharacterized protein {ECO:0000313\|EMBL:AFK47890.1}

Sequence

Transcript Sequence

>Glyur000183s00013048.1
AAGCCGTGTCGTGTGTTAATAGAAGCGTCACCATCCATAATGGGGAATGGGTGACGCCAGGTCATGAAAAGCAAGGAAAGGTGGAAATCGCAGTTTGAATTGAAACACACAGAACGCTGTTTTTTGTAAAATTGCTATTTTCCTTTTCTATTATGAGACAGGCTGTTAACGAGTAGATCGGAAGGCGCGAACAAAAATGGAGGTCGAAATTGCGCCTCCGTTCCCCTAAAATACATATATCACCACAATCACATTCACATTCACATTCACATTCAGATTGAGAGAAGACTCGTGGCTCAGAGACTCAGACTCCCTCTCTCACCCCCACCAAACGCGAAAGAGGGAGCACCTCCTCCTCCCCCGCTTTGGATCCGATTCACTCATTCCCCCATTGGGGTAAAATCTCATTTGCATTTTCCAGATCTGCTTCTATTGGAATCCTAATTAATTAACCATTTTGTTCTCTTCTTCAGTGGCGGCAACATGGTTGCACAGAAATTTGTTGTTGATTTGAATAAGCCCCTTGTTTTCCAGGTTGGGCATCTCGGAGAAGCTTATGACGAGTGGGTTCACCAGCCCATTATAAGCAAGGAAGGCCCTCGTTTCTTTCAAAACAGTTTCTTAGAGTTATTCACGCGCACTGCTTGGTGGGTGATTCCAATTGTGTGGGTGCCGGTTGCGTCTTGGTTCATTTCTGGCTCTGTGAGAATGGGCCTCCCTTCTCCACACGTGGCTCTTCTCGTGCTCCTTGGTATCTTCTTATGGACATTGGTCGAATACTTGTTGCACCGTTTCCTTTTCCATGTTCAAACCAAGAGCTACTGGGGGAATACCTTGCATTATCTTCTCCATGGCTGCCACCATAAGCACCCCATGGATAGCTTAAGACTTGTTTTCCCACCAGCTGCCGCCGCTATAATAGCTCTCCCGATCTGGAACTTAGTGAAGCTTTTAAGCACACCTTCAACTGCTCCTGCTGTGTTTGGAGGTATTTTGTTGGGCTATGTGATGTATGATTGTACCCATTACTACTTGCACCATGGTCAACCGAAGAGTGAAATGCCCCGAAATCTTAAGAAGTACCACTTGAATCATCACTATCGGATCCAGAGCTTGGGCTTTGGTATCACTTCACCATTATGGGATAAGGTTTTTGGAACGGTTCCTCCTCCATCAAAAGTGGATGCCAAACGTAGATGAGTTAACAGTTGAGGTTACATTTGTTCATTGGTTAAGATCATAGTAAATTCAGGAGTCCAGACAAAAAAATCTCAAGAATTCATGCTTGTGATTGTCTAATTTATTTTGCTCCTTTAATTGATGTTTCTGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	165612	168903	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013048.1	PF04116.8	FA_hydroxylase	87	206	1.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.575
SRR1783600	control	10.646
SRR1783602	moderate drought stress	1.871
SRR1811619	moderate drought stress	1.881

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.638
DRR006520	Root Summer glycyrrhizin high producing strain	4.561
DRR006521	Root Winter glycyrrhizin high producing strain	0.333
DRR006522	Root Winter glycyrrhizin high producing strain	0.303
DRR006523	Root Summer glycyrrhizin low producing strain	2.663
DRR006524	Root Summer glycyrrhizin low producing strain	2.572
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.427

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.032
SRR2868004	Drought Stress (root)	7.860
SRR2967015	Control (root)	6.728

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.934
SRR9715740	Leaf	2.386
SRR9715741	Leaf	2.481
SRR9715739	Root	6.182
SRR9715742	Root	5.418
SRR9715743	Root	4.220

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	68.864
SRR8749028	MeJA induced 9h	33.827
SRR8749029	MeJA induced 9h	72.730
SRR8749030	Uninduced	28.386
SRR8749031	Uninduced	24.570
SRR8749032	Uninduced	31.976

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.805
SRR8400027	Control - Root	10.584