Gene detail

Gene detail information of Glyur000183s00013044

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G75780.1	tubulin beta-1 chain
NR	XP_011085182.1	PREDICTED: tubulin beta chain-like [Sesamum indicum]
Swissprot	tr\|Q9ZPP0\|TBB1_ELEIN	Tubulin beta-1 chain
trEMBL	tr\|A0A068UWA3\|A0A068UWA3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_68 {ECO:0000313\|EMBL:CDP12577.1}

Sequence

Transcript Sequence

>Glyur000183s00013044.1
CTCTTCCTCGTCCTCTCTCCATTTTCCCTCTCATTTTTTTTTTCTTCATTTTCCCGAGAAAATGAGAGAAATCCTCCACATCCAAGGCGGGCAATGTGGCAACCAGATCGGGGCCAAATTCTGGGAAGTCATCTGCGATGAGCATGACATTGACCACACCGGAAAGTACAACGGCGACTCTGATCTCCAGCTTGAGCGCATCAATGTCTACTACAACGAGGCCAGTGGCGGAAGGTACGTCCCACGCGCCGTCCTCATGGATCTCGAGCCCGGCACTATGGATTCCGTCCGATCCGGACCCTTTGGCCAGATCTTCCGCCCCGATAACTTCGTGTTTGGCCAATCCGGTGCCGGAAACAATTGGGCCAAGGGTCACTACACAGAGGGCGCTGAACTTATCGACGCCGTCTTGGATGTTGTGAGGAAGGAGGCCGAGAATTGCGATTGCTTGCAGGGATTTCAAGTGTGCCACTCTTTGGGGGGTGGAACTGGCTCCGGCATGGGAACACTCCTCATCTCAAAGATTCGGGAAGAATATCCAGATCGTATGATGTTGACCTTTTCTGTATTCCCTTCCCCTAAGGTGTCTGACACAGTTGTGGAGCCATACAATGCCACTCTTTCCGTGCACCAGCTTGTTGAAAATGCCGATGAATGCATGGTCTTGGACAATGAGGCTCTCTATGATATCTGCTTCCGTACTTTGAAGCTTGCTACACCAACTTTTGGTGATCTTAACCACCTCATCTCTGCTACCATGAGTGGAGTTACTTGTTGTCTACGTTTCCCTGGGCAGCTAAACTCTGATCTTAGAAAGCTAGCTGTGAATCTCATCCCATTCCCTCGTCTCCACTTCTTCATGGTTGGATTTGCACCCTTGACATCAAGAGGGTCCCAACAATACCGCAACTTGACTGTGCCCGAATTAACTCAGCAGATGTGGGATGCTAAGAACATGATGTGTGCTGCAGATCCACGCCATGGACGTTATTTGACAGCTTCAGCAATGTTTCGTGGTAAGATGAGTACCAAGGAGGTGGATGAGCAAATGATCAATGTGCAGAATAAGAACTCTTCTTACTTTGTTGAATGGATACCCAATAATGTAAAGTCTAGTGTGTGTGATATCCCACCCAATGGTCTTAAGATGGCATCCACTTTCATTGGCAATTCGACATCAATTCAGGAGATGTTCAGGAGAGTTAGCGAGCAGTTCACTGCAATGTTTAGGCGCAAGGCTTTCTTGCATTGGTACACTGGTGAGGGAATGGATGAGATGGAGTTCACTGAGGCTGAGAGTAACATGAATGATCTAGTGGCAGAGTACCAACAATACCAGGATGCTACAGTTGATGAGGAAGAGTATGAGGACGAGGATGAGGATGTTGGTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	156598	158677	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013044.1	PF00091.20	Tubulin	3	222	1.40E-71
Glyur000183s00013044.1	PF03953.12	Tubulin_C	261	382	6.90E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.314
SRR1783600	control	0.316
SRR1783602	moderate drought stress	0.027
SRR1811619	moderate drought stress	0.027

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.155
DRR006520	Root Summer glycyrrhizin high producing strain	0.230
DRR006521	Root Winter glycyrrhizin high producing strain	0.308
DRR006522	Root Winter glycyrrhizin high producing strain	0.311
DRR006523	Root Summer glycyrrhizin low producing strain	0.237
DRR006524	Root Summer glycyrrhizin low producing strain	0.237
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.360
SRR2868004	Drought Stress (root)	0.230
SRR2967015	Control (root)	0.308

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.048
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.023
SRR9715739	Root	0.178
SRR9715742	Root	0.044
SRR9715743	Root	0.307

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	134.822
SRR8749028	MeJA induced 9h	75.675
SRR8749029	MeJA induced 9h	197.551
SRR8749030	Uninduced	3.804
SRR8749031	Uninduced	22.686
SRR8749032	Uninduced	32.005

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.099
SRR8400027	Control - Root	0.272