Gene detail

Gene detail information of Glyur000183s00013042.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46330.1	4.00E-145	Leucine-rich receptor-like protein kinase family protein
NR	XP_003524106.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]
COG	YP_004775215.1	2.00E-55	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	4.00E-175	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K7KPV8\|K7KPV8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G25641.1}

Sequence

Transcript Sequence

>Glyur000183s00013042.1
ATGGAGGAGTTACTCTATTTTCGCTTCTGGGTTTTCATGTTTTCACTGCACTGCTTCACGCCCTTGTTATTACCTCTAAGTGGAACCAACTTCACCACAGATAAATTAGCACTCGTTGCTCTAAAATCTTCAATCACTGAGGACCCTTACCATTTCCTGTCTCATAATTGGTCTTCCTCTGCCTCTGCTTCCTCCTCTGTATGCAACTGGGTTGGTGTCACTTGTGATGCTCGCCACGGAAGGGTAAGGACCTTGAATCTCGGTAACATGGGTCTCAGTGGCACCATACCCTCTCACATGGGAAACCTCACTTTCCTTGTTGAACTTCACCTTGGTGGAAACACTTTCCATGATCATTTACCACAACAACTTGTCCAGTTGCGTAGACTGAGATCACTCAACTTGAGCTACAATGAGTTTAGTGGAGATGTCCCATCATGGATTGGAGGCTTATCTGCACTCCGATACTTGGATCTTTCGAGTAACAAGTTTGGTGGCTTCATTCCTAAATCTGTATCCAATTTAACAAAGCTAGAGGTCTTGGAGTGGAACCACAATCTCATACAAAGAACCATTCCACCTCAAGTTGGCAAAATGACCCAATTGAGGGTTTTATCAATCGCTTCCAATAGTCTTTCGGGGACCATTCCTCCAACCATTTCTAACCTCTCTTCCCTCCAGCGACTCAGTTTATCTTATAACTCTTTGTCAGGAAGTATTCCGCGGGAGATTGGTGAGGTTCCACAGCTAAGAATAATGTATCTTGGGAATAATCCGCTAAGTGGCTCCATACCATCAACAATCTTCAATCACACAATGCTGCAAGATATTGAACTTGGGTCCAGCAATTTATCAGGAACTCTTCCATCAAACGTGTGCCTTGGACTCCCAAAACTCCAAGTTCTTTATCTGGGATTCAACCGCTTCACCGGTAAAATGCCATCTGTTTGGCATCTCTGCAAAGATTTGACCGATTTAGACTTGTCCAAAAACATGTTCAGCAGAGGAAGCATACCACGTGATATTGGAAACTTAACTACGCTTGCCTCCATTTATCTTGACGAGGACAACTTGGAAGGAGAAATTCCATCCTCTCTTTATAACATATCTTCACTGAGAGCACTCAGCCTCGAAAGCAACAAGTTGAATGGTAGTCTATCAGAAAAGATGTTTCATCAGCTTCCATTGCTAGATTTCTTGGCTTTGGATGATAATCAATTTGTGGGAAGTATTCCAAAATCTATTGGCAATTGTACGATGCTCGAAGAATTATATCTTGGTGCCAACTCCTTCACAGGTTCTATACCCGAGGAGATTGGTGATCTTCCTGTACTTTCAAATTTGACTATGGGAAATANCCTTTTAGATGGATCTATTCCCTCAAAGATCTTTAACATGACATCACTGAGTTACTTGTCTCTGGCAACGAATTCCCTCACAGGATTTATTCCATCACATATCAGCCTAGAAAACTTGGAAGAACTGTACTTGTTTGAAAACCAACTTGGTGGGAACATTCCAAGCAGCATATCCAATGCCTCTAAGCTCAACTATGTGGATTTGAAACTGAACAAGTTCAATGGAGTTATACCCAAAGCTCTGGGGAGTTTGAGATACCTTCAGGGGCTTGATGTAGGATTGAATAATTTAACTACCCATGCTTCCACTATTGAATTAAGCTTCCTTAGTTCTTTGAATTATCTTCAAATATCAGGGAATCCAATGCATGGACACCTTTCTGAATCAATTGGAAACATGTCCAATTTGGAACAGTTAATTGCTGATGATTGCAGTATTGATGGTAAAATTCCATTGGAAATTGGAAATTTAAGCAAGCTGTTTATACTGAGTTTGTATCACAATGACTTGAGTGGGCCAATTCCGAAAACAATAAATGGCTTGCAGTCTCTTCAATATTTGAGCCTTGGAAACAACCAATTACAGGGAACCATCATTGCAGAACTTTGTGTAATCAACCGGCTTAGTGAGTTGTATATAACTGAGAATAAGCTGATTTCTGGAGCCATCCCAGCATGCCTTGGTAATCTTACTTCTCTAAGAAAGCTTTACTTGAACTCTAACAAACTAAATCAGGTACCCTCTTCTCTTTGGAGTCTCAAAGACATGCTGGAGGTAAACTTATCAGACAATGCTTTAACTGGATTTCTTCCACTTGATATTGGAAATTTAAAGGCTGTTACATTGTTGGATCTATCCAAGAATGAGATTTCTGGAGGCATTCCTAGGGCCATTACTGGATTGCAGAATTTGCAAACACTCAGTTTAGCACACAATAAATTGCTAGGGAATATTCCTGATTCATTTGGCAGCTTGATAAGTTTGACATACTTGGACTTATCCCAAAACTATCTGTTTGGGGTGATTCCAAAATCCATGGAGTCACTTCAGTATCTCAAATTTATCAATCTTTCTTATAATGGGTTAGAAGGTGAAATTCCCAATGGTGGACCTTTTAAAAATTTCACAGCTCAATCTTTCATATTTAATAAAGCCCTTTGTGGAAATTCTAGACTACAAGTCCTACCATGCAGTAAAATGAAGAGGAAAAGGTCAAATGCAAATCTGTTCATCAAATGGATGTTACCTGTAATGTTGTCAACCATCTTGATAGTTGCGTCTGCATTCCTTCTAAGAAGGTGTCAAAGAAAGAACGGTGGTGACCCTACTGAAGTGAGTTTATCAGCCTTACCAGCAACAAGAATGATTTCCTACAATGAACTTTCACAGGCAACCAATGGATTTGATGAGAGTAACTTACTTGGCAAGGGAAGTTTTGGCTNTGTGTTCAAAGGCATACTTCCAAATGGGATGATTGTTGCGGTCAAGTTATTTAATTTGGACGTGGAATTAGGATCAAAGAGCTTTGATGTAGAATGCGAAGCAATGCGCAATCTGCGTCATCGAAATCTCATCAAGGTCATCGGTAGTTGTTCAAATTTTGATTACAAGCTTTTAGTAATGGACTTCATGCCTAATGGGAGCCTTGAAAGATGGTTGTATTCTCGTAACTATAACTTGAACTTCTTGCAAAGGTTGAATATAATGATAGATGTAGCATCTGCATTGGATTACATGCATCATGGTTCTTTGCCAACTGTGGTTCACTGTGATGTAAAGCCTAGTAATGTCTTATTGGATGAAGACATGGTTGCCCATGTCAGTGACTTTGGGATTGCCAAACTTCTAGATGAAGGACAATCCAAAGAATATACCAAGACCATGGCTACACTTGGCTACATTGCACCTGAGTATGGATCCAAGGGGACTATCTCTACAAAAGGAGATGTGTACAGTTTTGGGATTATGTTGATGGAAACATTCACAAGAAAGAAGCCAACAGATGAGTTATTTGTTGCTGGATTGAGCATGAGAGATTGGATTAGTGAATCCTTACCCCANGCAATCACTCGAGTTATGGATTCCAACTTGTTGAAAGATGAAGGATATCTTATTGATGACATCACATCATCTGTATCATCTATTTTTGAATTGGCCTTTAATTGTTGTGCAGATTTGCCAGAAGAACGAATGAATATGACAGATGTTGCTGCATCATTAAACAAAATCAAGGCCAACCACATGCAACTTAAGATTATATAG

Protein Sequence

>Glyur000183s00013042.1
MEELLYFRFWVFMFSLHCFTPLLLPLSGTNFTTDKLALVALKSSITEDPYHFLSHNWSSSASASSSVCNWVGVTCDARHGRVRTLNLGNMGLSGTIPSHMGNLTFLVELHLGGNTFHDHLPQQLVQLRRLRSLNLSYNEFSGDVPSWIGGLSALRYLDLSSNKFGGFIPKSVSNLTKLEVLEWNHNLIQRTIPPQVGKMTQLRVLSIASNSLSGTIPPTISNLSSLQRLSLSYNSLSGSIPREIGEVPQLRIMYLGNNPLSGSIPSTIFNHTMLQDIELGSSNLSGTLPSNVCLGLPKLQVLYLGFNRFTGKMPSVWHLCKDLTDLDLSKNMFSRGSIPRDIGNLTTLASIYLDEDNLEGEIPSSLYNISSLRALSLESNKLNGSLSEKMFHQLPLLDFLALDDNQFVGSIPKSIGNCTMLEELYLGANSFTGSIPEEIGDLPVLSNLTMGNXLLDGSIPSKIFNMTSLSYLSLATNSLTGFIPSHISLENLEELYLFENQLGGNIPSSISNASKLNYVDLKLNKFNGVIPKALGSLRYLQGLDVGLNNLTTHASTIELSFLSSLNYLQISGNPMHGHLSESIGNMSNLEQLIADDCSIDGKIPLEIGNLSKLFILSLYHNDLSGPIPKTINGLQSLQYLSLGNNQLQGTIIAELCVINRLSELYITENKLISGAIPACLGNLTSLRKLYLNSNKLNQVPSSLWSLKDMLEVNLSDNALTGFLPLDIGNLKAVTLLDLSKNEISGGIPRAITGLQNLQTLSLAHNKLLGNIPDSFGSLISLTYLDLSQNYLFGVIPKSMESLQYLKFINLSYNGLEGEIPNGGPFKNFTAQSFIFNKALCGNSRLQVLPCSKMKRKRSNANLFIKWMLPVMLSTILIVASAFLLRRCQRKNGGDPTEVSLSALPATRMISYNELSQATNGFDESNLLGKGSFGXVFKGILPNGMIVAVKLFNLDVELGSKSFDVECEAMRNLRHRNLIKVIGSCSNFDYKLLVMDFMPNGSLERWLYSRNYNLNFLQRLNIMIDVASALDYMHHGSLPTVVHCDVKPSNVLLDEDMVAHVSDFGIAKLLDEGQSKEYTKTMATLGYIAPEYGSKGTISTKGDVYSFGIMLMETFTRKKPTDELFVAGLSMRDWISESLPXAITRVMDSNLLKDEGYLIDDITSSVSSIFELAFNCCADLPEERMNMTDVAASLNKIKANHMQLKII

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	148680	154941	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013042.1	PF08263.7	LRRNT_2	33	76	1.10E-09
Glyur000183s00013042.1	PF12799.2	LRR_4	129	165	2.40E-07
Glyur000183s00013042.1	PF12799.2	LRR_4	200	237	1.00E-07
Glyur000183s00013042.1	PF13516.1	LRR_6	490	512	1.6
Glyur000183s00013042.1	PF00560.28	LRR_1	685	706	1.3
Glyur000183s00013042.1	PF12799.2	LRR_4	756	791	2.20E-06
Glyur000183s00013042.1	PF00069.20	Pkinase	924	1189	3.20E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.052
SRR1783600	control	0.053
SRR1783602	moderate drought stress	0.145
SRR1811619	moderate drought stress	0.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.315
DRR006520	Root Summer glycyrrhizin high producing strain	0.272
DRR006521	Root Winter glycyrrhizin high producing strain	0.241
DRR006522	Root Winter glycyrrhizin high producing strain	0.208
DRR006523	Root Summer glycyrrhizin low producing strain	1.066
DRR006524	Root Summer glycyrrhizin low producing strain	1.121
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.321
SRR2868004	Drought Stress (root)	0.081
SRR2967015	Control (root)	0.194

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.100
SRR9715740	Leaf	0.185
SRR9715741	Leaf	0.127
SRR9715739	Root	0.013
SRR9715742	Root	0.253
SRR9715743	Root	0.312

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.726
SRR8749028	MeJA induced 9h	5.878
SRR8749029	MeJA induced 9h	6.555
SRR8749030	Uninduced	0.571
SRR8749031	Uninduced	0.231
SRR8749032	Uninduced	0.789

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.071
SRR8400027	Control - Root	0.105