Gene detail

Gene detail information of Glyur000183s00013039

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-76	NB-ARC domain-containing disease resistance protein
NR	KEH31343.1	0	NBS-LRR type disease resistance protein [Medicago truncatula]
COG	YP_001277443.1	4.00E-07	NB-ARC domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q7XA42\|RGA1_SOLBU	9.00E-118	Putative disease resistance protein RGA1
trEMBL	tr\|A0A072UQM3\|A0A072UQM3_MEDTR	0	NBS-LRR type disease resistance protein {ECO:0000313\|EMBL:KEH31343.1}

Sequence

Transcript Sequence

>Glyur000183s00013039.1
TTGATTACTGTACTTTATTGCCTCATTAATTATTATCTCTTTGGTTCCTTCCCACTTCCACCCACCGTTGCCCTTTGCACAAAGAAGATGGCTTCAACAGTTTCAGGGTTGTTGACCAACATGTTGGACCGGTTAGCAACCAGTGCCTTTAAGAACATATCCATGGCAAGGGGTCTTGAAACTGATGTGGGCACCCTCCAAAACACTCTCACAATAATCAGTGCCTTCATTGTTGATGCTGAGAACAAGCAAACACAGAGCAACTCCATCTTGCTCTGGCTTCACCAACTCAAAGATGCTTTATTTGATGCCCGTGACATCCTTGACGAGATTGAGTGTGAGGCTCTTAGAAACCAAGTTGTGAAGACACATGGAGGCTTCACCAGAAAGGTACACCGTTTCTTCTCATCCTCTAACCCTCTTGCATTCCGTGTTAAGATGGCCCACAAGATCAAGGACATTAAGGAGAGGATAGATGAGATAGCTACTCTTAGGATGAAGTTAGGTCTTCTCTCAGATAACAACAACCATGTGCATGTGCATGTATATAATGCAAGTAGTACTAGTAGTAGTGTTGTGACAATGAATCAGAATAAGATGGCTTGGAGAGAGACCCATTCTTATGTTAGGCCTTCCCATGTGATTGGTAGAGATGAGGAGAAAGAAAATATCATTTCTTTGTTGATGGTTCCACCATTAGATGGGGATGAGCTTGATGTTATTCCAATTGTTGGAATTGGGGGGCTTGGAAAGACCACACTTGCTCAATTGGTGTACAATGATGATAGGGTGATTGAGCATTTCGAATTGCGCATGTGGGTCTTTGTGTCTGATGATTTTGATGTTAAGAGGCTTGTACTTGAGATTCTTAAAGCCATGCATGGAACAGATATTGTAGATGCTCACAACAACTATAGTTTTGATCAATTGCAGAATCTACTCCGCGAGAGATTGTGTGAGAGGAGATTTCTGCTGGTTCTAGATGACGTATGGAATGAAGATTATAGGGAGTGGCTTGAATTGAGAAATCTTTTACTAGGCATGCACGATGAAGATAGTAAACTCGGTAACAAGATTATCACGACCACTCGTAGCGACAAGGTTGCTTCGATAATGGGGAATGCTTATAAACACAACTTGAGGTATCTCCCAAAAGAAGATTGTTTGAAGTTGTTTGTTAGGTGTGCATTTCCAGCAGGAATGGAGAAACAACACCCAAGGCTTCTAGAAATTGGAAAGGACATTGCTAGAAAGTGTAAAGGGTTGCCCCTGGCAGTGGTGAGTTTAGGGTGCTTGCTTTACTCAAAACCTGATGAAAGTGAGTGGAAGAAAATAAGGGATAGTGAAATTTGGAAAATGAACCCACAAGATGGTGACGGCATTTTGGCTGCATTGAAACTAAGCTATAACCACTTGCCATCTGAATTGAAACAGTGTTTCTCCTATTGTTCAATTTTTCCCAAGGGTTATGAGTATACTAATCTGGAGCTGATTTCTTTTTGGATGGCCCATGGTCTACTACAAACCAAAAATGAAGATCAAGAGCCAGAAGATCTTGGGGAGTTTTTCATTCAGGAGTTAGTTTCAAGATCTTTCTTTGAAAGTGCTACTGAAGAACAACTGGTCATGGATGGTCTAATTTTTGAAGAGCTTGAACATTTAGGCATCTCCTTTTTCAAAATGCATGATCTTGTTCATGACCTTGCCGTGTCCACAATGCAAAGTGAAAGGGCAGTAGTGAAATTTAACTCAATAAATGCTAAAGAAAAAGTGCAGCATTTATCATTTTCAGACAGTGGTGAAGGGGTTCCAACTTTTGGTAAAATGTTGAGTAAGGTCCGAACCATTGGATTCTGGCATGCAGGTCAAAATGCATGTGCAATCACTGAACCATTTGTCAAATGGATCTCCAAGGAATTCAAGTACCTCAGGGTGTTGAATATACAAGGTTCAAATTTTCAATTCTTGCCAGATTGTTTCAACAGAATGAAGCATTTGAGGTATCTTGATTTAAGCTATTGCCAGAGGATGGAAAAACTCCCAGATTCTATTTGCAAGCTTCAAAGCCTAGAGGTTTTAAATCTCTGTAGATGTGTAGCACTCAAACATATTCCCAAAAACTTCAAGAATCTTGTCAGCCTTAGGATTCTGTGGATTACCACACAAGTCACTAATTTGTCTTTCATAAGTATTGGGTACTTGAAATATCTACAAATTTTAATTTTGTGGAATTGTGAAAATTTGGTCTCCCTTCCGCGCGATTTGAGGCACTTGACTGCCTTGAAGAGGCTGACTATTGAGGCTTGTGAAGAGGTGATTAGTTTTGAGGATGAAGGAGAAGATGATGAAAACTACTCCTTGAAACTTGAAAGATTTTCAATTGACAAATTGCCCAAATTGGCATCATTACCTGATTGGCTTAGAAGATCTGGCAAAACTCTGAGATACATGGGTCTTTCGCAATGTCCGAGCTTAATGGCATTGCCAGAATGGTTGCCAAATCTAACATCACTCGAGACGCTTCTCATTGCTGATTGTCCAAACTTGACCCTGCCCCAGCACATGGCTCATCTTAGAAACCTTCAGAACTTGAAGATATATGGATGTCCTCAGCTAGTTGAGAGATGCAAACGAAATACAGGNTCTGACTGGTCCAAGATAGCTCATATCCCAAATGTTGAAACTTCCCTGTTGGAAACTTTGAAATATACACTGAAGTTGGGTTACTNTATCAATCAGCTTTGTCCTTTGTGTTCTTCGGACTGGATTATCTTGCAAGCGTTTAGGATCACTGATAATTTAGTGCAAGCACACTCACTGAACAGCATGGAAGCAGTAGAGACTTTGAAGTTTGCACCACTGCCACTGCCACCCACCACATCCACCACCTCAGATGCCGGACACCTTCTACCGGTTACGCCCGACATCCTCCACCACCGGTGTCCAACACCTGCCATAATGGCCGCTTGACACTAATCATTACCCTGCCACAGCCTTTGTCAAGCACCTTCAGCTAGTGCCTCTACTGCACAACACCCTCCACCACCTTCCAACATTTAGCTACATCTTAGTGGAAAATATCTGATTATTTCAGTTTTTATTCAATTAATCATGGCTTTAGTTGTCATGAGCTAACCATTCCA

Protein Sequence

>Glyur000183s00013039.1
LITVLYCLINYYLFGSFPLPPTVALCTKKMASTVSGLLTNMLDRLATSAFKNISMARGLETDVGTLQNTLTIISAFIVDAENKQTQSNSILLWLHQLKDALFDARDILDEIECEALRNQVVKTHGGFTRKVHRFFSSSNPLAFRVKMAHKIKDIKERIDEIATLRMKLGLLSDNNNHVHVHVYNASSTSSSVVTMNQNKMAWRETHSYVRPSHVIGRDEEKENIISLLMVPPLDGDELDVIPIVGIGGLGKTTLAQLVYNDDRVIEHFELRMWVFVSDDFDVKRLVLEILKAMHGTDIVDAHNNYSFDQLQNLLRERLCERRFLLVLDDVWNEDYREWLELRNLLLGMHDEDSKLGNKIITTTRSDKVASIMGNAYKHNLRYLPKEDCLKLFVRCAFPAGMEKQHPRLLEIGKDIARKCKGLPLAVVSLGCLLYSKPDESEWKKIRDSEIWKMNPQDGDGILAALKLSYNHLPSELKQCFSYCSIFPKGYEYTNLELISFWMAHGLLQTKNEDQEPEDLGEFFIQELVSRSFFESATEEQLVMDGLIFEELEHLGISFFKMHDLVHDLAVSTMQSERAVVKFNSINAKEKVQHLSFSDSGEGVPTFGKMLSKVRTIGFWHAGQNACAITEPFVKWISKEFKYLRVLNIQGSNFQFLPDCFNRMKHLRYLDLSYCQRMEKLPDSICKLQSLEVLNLCRCVALKHIPKNFKNLVSLRILWITTQVTNLSFISIGYLKYLQILILWNCENLVSLPRDLRHLTALKRLTIEACEEVISFEDEGEDDENYSLKLERFSIDKLPKLASLPDWLRRSGKTLRYMGLSQCPSLMALPEWLPNLTSLETLLIADCPNLTLPQHMAHLRNLQNLKIYGCPQLVERCKRNTGSDWSKIAHIPNVETSLLETLKYTLKLGYXINQLCPLCSSDWIILQAFRITDNLVQAHSLNSMEAVETLKFAPLPLPPTTSTTSDAGHLLPVTPDILHHRCPTPAIMAA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	133739	137749	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013039.1	PF00931.17	NB-ARC	218	511	1.40E-71
Glyur000183s00013039.1	PF00560.28	LRR_1	665	687	0.02
Glyur000183s00013039.1	PF00560.28	LRR_1	689	711	0.094

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.556
SRR1783600	control	2.603
SRR1783602	moderate drought stress	3.952
SRR1811619	moderate drought stress	3.930

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.100
DRR006520	Root Summer glycyrrhizin high producing strain	1.058
DRR006521	Root Winter glycyrrhizin high producing strain	0.638
DRR006522	Root Winter glycyrrhizin high producing strain	0.586
DRR006523	Root Summer glycyrrhizin low producing strain	3.454
DRR006524	Root Summer glycyrrhizin low producing strain	3.398
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.206
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.206

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.315
SRR2868004	Drought Stress (root)	2.724
SRR2967015	Control (root)	2.797

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.008
SRR9715740	Leaf	0.833
SRR9715741	Leaf	1.491
SRR9715739	Root	0.998
SRR9715742	Root	3.484
SRR9715743	Root	3.394

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.599
SRR8749028	MeJA induced 9h	3.958
SRR8749029	MeJA induced 9h	4.734
SRR8749030	Uninduced	10.342
SRR8749031	Uninduced	3.901
SRR8749032	Uninduced	4.613

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.333
SRR8400027	Control - Root	4.897