Gene detail

Gene detail information of Glyur000183s00013037

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20910.2	0	double-stranded RNA binding protein-related / DsRBD protein-related
NR	XP_004504714.1	0	PREDICTED: small RNA 2'-O-methyltransferase-like [Cicer arietinum]
COG	YP_003509724.1	2.00E-34	type 12 methyltransferase [Stackebrandtia nassauensis DSM 44728]
Swissprot	tr\|Q9C5Q8\|HEN1_ARATH	0	Small RNA 2'-O-methyltransferase
trEMBL	tr\|A0A072UPT2\|A0A072UPT2_MEDTR	0	Small RNA methyltransferase {ECO:0000313\|EMBL:KEH31346.1}

Sequence

Transcript Sequence

>Glyur000183s00013037.1
GGAAGACACACTCCAAACTCCAAAACCTTTCCCTCTTGATTCTCCCACAGTTTGTCCCTTCCTCTTTATCCGTTTTTTAAACCCCATTCTCTTCGCACTCAACGCAGCTTCAGGATAGATAGTAGATGCTNTGAGCTTTCTCATGGAAACAAAAGAACATCCTGCTGTTGGACCAAAAAAACCAACCCTTACACCTAAGGCTATAATACACCAAAATTTTGGTACTAAGGCTTGCTATGCGGTAGAGGAAGTGAAGGAGCTTCGCGAAACTGAANGTCCAGCGTTAAGTATTCCACAGATGGGGCCCTGCCTTTATCGTTGCACATTGCAGCTTCCAGAACTTACTGTCGTGTCAGGGACATTTAAGAAAAAAAAGGATGCAGAGCAATCTGCAGCAGAGATGGCTATAGAGAAGCTTGGTATCCANCCAGCGGCCATTGATCCCACTCCTCAGGAAGCACAGGAAAGTTTAGTTGCTCGAGTTGCATACCTATTTTCAGAAAAATCTGATACCATTTTTCTTTGCCATTCGACACTTATACAGCTTCTTATATCTGANCATCCACTCAGTGGTCACATTCGAGCAACTTTGCGGAGCAAAGGCGATTGTTGTGGCTCGGTTCCTATTTCTGTAATTGCTGTTTATGATGCAAAGACTTTTAATTTGTGTAAATGTATTAATCCTGAGGTGGAGTCAAATCCATTTTTGGTTATTTCATACATAATGAAGGCCACTACAAAGTTACATGGGTTTCTTGCTACCTNTGAACAGCATCTCTGGATTAGTAAGCAGAGTCCATATCCACAAGATATTATAGAGTCAGTAATGAAAGAAGGTGATTCACAAGAATGCATTCAGGTTGCTGCCATACGCATTCCTAGTTCAATGGAAAAATCTGTTGAAGCAGTGACTCTTAATATATCTTCAAGAGAGTACTACCTTGATATCATTGCAAATAAACTTGGTTTAGAAGATGGTGCGGATGTTCTGATTTCAAGGAATTTAGGTAAAGCTTCCTCCGAGACAAGACTGTTCTTTGCTGCTCCAAAATCATATCTATTGGATCCGTCTTCTGAATTTGCAAATGGAAAAGAAACCATTCATATTGAGGGATCTCTAAATGTAAGGGCAAGATACTTGTCTGGGCAAGATATAATTGGCGATGCAATATTAGCATGCATTGGATATACACGGAAATCTAGAGATCTTTTCTACGAAGATGTAACAGCTCGGTTATATTACAGGATGCTTTTAGGGAAGACTCCAGGGGGCATTTATAAATTATCCAGAGAGGCAATACTTACAGCTGAGTTGCCTTCAAGATTCACCACAAGAGCAAACTGGAGGGGTTCCCTTCCAAGGGATATACTTTGTATGTTTTGCCGCCAGCACCGTCTGTCTGAACCTCTCTTTTCCATTATAAGTCCTCCTTTCAAAATGTTATCTGAATCATCAGAATCATGTTTGAAGGCAGGCTCAGGCACAGATGTGATTGAATGTGCCAATGGGGCCTCTGTAAATGCAAGTCCAAAGCAACCAGATTCAGAGGTGTTTAAATGTGAAATAAAGTTACTTTCTAGGTGTGAGGATGTACTACTTTCTTGTTCCCCTGAGGATTGTTACAAGAAGCAGAATGATGCTATTCAAAATGCTTCATTGAAACTNCTATTGTGGTTGAACAAGTATTTTAAGAGTGTAATTGTTCCTTCTGAGCAGCTTTATGAGACTGCAGACAACTTCAGCATCCAGATTTTTTCAAAAAACCTTTTCAGAGAGATTTTAGCTGGTCAATCAATTCACAATTGTCAGCTTAATGCCATTCAATGCAATAAATTACTTGAATCAATCTATATGAATTCATCTCATGACATGCTGGGAAACGGAGTGTGCTCATTAAAGATTGAAGGTCCAGACTCTGGTGTCTGTCCATGCAATGGATCTTTACCTTGTATTAGTTATTCAGTTTCTTTGGTTGTGGAGGGTGAGAATATGAAAGAAGTTATTGAAGTTTGCAGTGAGTTTGAGTTTGAGATGGGGGTTGGGGCTGTGATTTCCTANGTTGAGGAGGTTGTGATGCAGATGTCTGTTGGCCAGTATGCTTATTTCACTACGAACTTNCTCACTTCTGATTTGATTTTTGCTTCAGCTGATGATTCAGTGAAGATGTCATCCCTGTTATCTTCTAAAGCCTGCTGTGTGGAGTATGGAATAAGTTTGACCAAAGTTGCAGAACCTCCAGAGGAAAGAATGGAGCAGGCTCTTTTCAGCCCTCCACTTTCAAAGCAACGAGTGGAATTTGCAGTGCNACACATTGTAGAATCCCATGCTACTACTTTGCTTGATTTTGGATGTGGATCTGGAAGCTTGTTGGAAGCATTGCTAAAATATTCAACTTCTCTGGAGAAAATCGCTGGTGTTGATATTTCGCAGAAAGGTCTTACACGTGCNGCAAAGGTACTAAATACAAAATTAGTTACAAATTCAGATGCTGATGCGATATGGACACACATAAAAGCAGTTATTCTTTATGAAGGCTCAATTACAAATTTTGATTCCAGGTTGCATGGATTTGATATTGGCACTTGCTTGGAGGTGATTGAACATATGGATGAAGATCAAGCTTGTCTATTTGGGGATGTGGCATTAAGTTGTTTTTGTCCAAGGATTCTCATTGTTTCTACACCAAATTTTGAATACAATGTAGTGCTCCAGAGGTCGAATCCTCTGACCCAAGAACAAGAGGAATTGGACGAGAAAACCCTCTTACAATCATGTAAGTTTCGCAATCATGACCACAAATTTGAGTGGACCAGAGAACAGTTCAGACAATGGGCATCTGATTTAGCTGCACGGCACAATTATAATGTAGAATTCAGTGGGGTTGGTGGTGCTGCTGATGTTGAACCAGGCTTTGCCTCACAGATTGCTGTGTTTAGAAGGGAATGGAGACCTGAGGATGACGTACATAAGCATGCTGATATAGAACACCACTATAATGTAATATGGGACTGGAATAGTGAAAACAAATGATTTTTTCTTTTAAAAAAACTAACAGCATGAGACTTGAACAGTTCTATTAGGTACTTGGACTGCTGTACTTGAAAGAAGAGGAGCAAAATATAATGGAGGCTAGGAGATAGACAATGAAAGGAATATTGAGAGGTTTNGGTAGGGCATCAATTTGGTTAAACCTTTAGATCATGTCTTGTGACTTTAGTTGTGACAATTTATGAAGTCTGAAATTGGCTGCTGGGAGAGTCAGAGAGATGGTGGGATTTTTTGGAGGGTGGATGATAAAAAAGTTGGGTCCTGTCCTGAGGGATACGAGGAAGTTTTCAAGGATAGTGGTATAATTTATGTAGGAGGCATGCCGCTTTCTGATAGTATAATCCTAAATAGATAGTGACATGTTTTGATTACATTTTTCAGCCATCAAAACGAGATTGTATTTTTGCTTTCTTCGTCAACAATTCATACGGCATATCTTTATATATAAACACTAATCAGAAAGTAAAAGGAAGTGTAACCTGCATAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	120461	128318	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0001510 RNA methylation

molecular_function

GO:0008171 O-methyltransferase activity

GO:0008173 RNA methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013037.1	PF00035.20	dsrm	55	92	4.00E-05
Glyur000183s00013037.1	PF13489.1	Methyltransf_23	729	899	7.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.089
SRR1783600	control	4.087
SRR1783602	moderate drought stress	2.843
SRR1811619	moderate drought stress	2.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.602
DRR006520	Root Summer glycyrrhizin high producing strain	4.661
DRR006521	Root Winter glycyrrhizin high producing strain	2.064
DRR006522	Root Winter glycyrrhizin high producing strain	2.026
DRR006523	Root Summer glycyrrhizin low producing strain	4.786
DRR006524	Root Summer glycyrrhizin low producing strain	4.832
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.405
SRR2868004	Drought Stress (root)	4.731
SRR2967015	Control (root)	4.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.690
SRR9715740	Leaf	3.626
SRR9715741	Leaf	3.647
SRR9715739	Root	0.624
SRR9715742	Root	5.360
SRR9715743	Root	4.163

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.001
SRR8749028	MeJA induced 9h	6.822
SRR8749029	MeJA induced 9h	8.461
SRR8749030	Uninduced	1.510
SRR8749031	Uninduced	1.357
SRR8749032	Uninduced	0.923

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.291
SRR8400027	Control - Root	5.138