Gene detail information of Glyur000183s00013034 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29790.2 | 4.00E-123 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | XP_004504712.1 | 0 | PREDICTED: uncharacterized protein LOC101498967 [Cicer arietinum] |
| trEMBL | tr|A0A072UPV1|A0A072UPV1_MEDTR | 0 | S-adenosyl-L-methionine-dependent methyltransferase {ECO:0000313|EMBL:KEH31356.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00183 | 103058 | 104197 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000183s00013034.1 | PF03141.11 | Methyltransf_29 | 210 | 321 | 2.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 87.138 |
| SRR1783600 | control | 87.801 |
| SRR1783602 | moderate drought stress | 71.154 |
| SRR1811619 | moderate drought stress | 71.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 42.107 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.453 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.502 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 102.657 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 100.868 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.026 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 52.333 |
| SRR2868004 | Drought Stress (root) | 35.239 |
| SRR2967015 | Control (root) | 51.938 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.899 |
| SRR9715740 | Leaf | 20.670 |
| SRR9715741 | Leaf | 28.074 |
| SRR9715739 | Root | 72.939 |
| SRR9715742 | Root | 80.442 |
| SRR9715743 | Root | 71.531 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 63.658 |
| SRR8749028 | MeJA induced 9h | 48.733 |
| SRR8749029 | MeJA induced 9h | 53.535 |
| SRR8749030 | Uninduced | 8.275 |
| SRR8749031 | Uninduced | 8.452 |
| SRR8749032 | Uninduced | 13.282 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.668 |
| SRR8400027 | Control - Root | 62.167 |