Gene detail information of Glyur000183s00013033 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G64520.1 | 7.00E-63 | regulatory particle non-ATPase 12A |
| NR | XP_004505436.1 | 7.36E-85 | PREDICTED: 26S proteasome non-ATPase regulatory subunit RPN12A-like [Cicer arietinum] |
| Swissprot | tr|Q9SGW3|PSD8A_ARATH | 8.00E-77 | 26S proteasome non-ATPase regulatory subunit 8 homolog A |
| trEMBL | tr|I1KRD4|I1KRD4_SOYBN | 6.00E-85 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G08690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00183 | 99307 | 101391 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000183s00013033.1 | PF10075.4 | PCI_Csn8 | 161 | 217 | 1.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.168 |
| SRR1783600 | control | 17.523 |
| SRR1783602 | moderate drought stress | 19.111 |
| SRR1811619 | moderate drought stress | 18.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.622 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.884 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.463 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.736 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.489 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 40.717 |
| SRR2868004 | Drought Stress (root) | 32.608 |
| SRR2967015 | Control (root) | 33.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.029 |
| SRR9715740 | Leaf | 8.825 |
| SRR9715741 | Leaf | 14.632 |
| SRR9715739 | Root | 10.883 |
| SRR9715742 | Root | 14.655 |
| SRR9715743 | Root | 17.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 75.752 |
| SRR8749028 | MeJA induced 9h | 29.781 |
| SRR8749029 | MeJA induced 9h | 66.476 |
| SRR8749030 | Uninduced | 22.484 |
| SRR8749031 | Uninduced | 29.860 |
| SRR8749032 | Uninduced | 33.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.213 |
| SRR8400027 | Control - Root | 31.745 |