Gene detail information of Glyur000183s00013030 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29850.1 | 5.00E-53 | double-stranded DNA-binding family protein |
| NR | ACF74279.1 | 1.11E-75 | double-stranded DNA-binding protein [Arachis hypogaea] |
| COG | YP_003482399.1 | 1.00E-15 | DNA-binding TFAR19-related protein [Aciduliprofundum boonei T469] |
| trEMBL | tr|B4UW59|B4UW59_ARAHY | 4.00E-76 | Double-stranded DNA-binding protein {ECO:0000313|EMBL:ACF74279.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00183 | 93189 | 96091 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000183s00013030.1 | PF01984.15 | dsDNA_bind | 15 | 125 | 2.10E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 49.049 |
| SRR1783600 | control | 49.986 |
| SRR1783602 | moderate drought stress | 48.607 |
| SRR1811619 | moderate drought stress | 49.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 178.734 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 173.259 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 307.242 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 307.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 186.218 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 192.127 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 103.715 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 105.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 196.704 |
| SRR2868004 | Drought Stress (root) | 199.172 |
| SRR2967015 | Control (root) | 189.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 172.885 |
| SRR9715740 | Leaf | 179.930 |
| SRR9715741 | Leaf | 169.363 |
| SRR9715739 | Root | 33.453 |
| SRR9715742 | Root | 78.299 |
| SRR9715743 | Root | 70.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 322.451 |
| SRR8749028 | MeJA induced 9h | 165.202 |
| SRR8749029 | MeJA induced 9h | 384.106 |
| SRR8749030 | Uninduced | 301.311 |
| SRR8749031 | Uninduced | 420.079 |
| SRR8749032 | Uninduced | 447.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 149.478 |
| SRR8400027 | Control - Root | 146.402 |