Gene detail

Gene detail information of Glyur000183s00013022.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18240.1	0	starch synthase 4
NR	KHN25877.1	0	Glycogen synthase [Glycine soja]
COG	YP_008595.1	7.00E-161	glycogen synthase [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q0WVX5\|SSY4_ARATH	0	Probable starch synthase 4, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|I1K307\|I1K307_SOYBN	0	Starch synthase, chloroplastic/amyloplastic {ECO:0000256\|RuleBase:RU361232}

Sequence

Transcript Sequence

>Glyur000183s00013022.1
GTTTTCTCATTTCTGTTTTCTGTTGCAAATTAGTTAGAGGTAGTTAGTTAGTTGCTCCCAAGGTCACTGGCCGTTGCCCATATATATTAATATCGAAGTAGCTTCCTGTGAACTCTTCAGATTCAGTTCATTCAGTTGATTTGATTCTTTCATCTCTCTCTCTCTCTCTCTCGGTTCCTTTTTCTATTCGTGAGTTTTTCTGATTCAAAGATTGATCGNTTGATCGGTGAGTTGAAGAAATGGCTACGGAGTTGACAACGTGTTTCGTGTGCTCGAATCTCAGCGGCTTCAACTGTAACCACCGCNATAGGGTACTCGTGCGCTTTCCCCNTTCNGCTTCTTGCAAAATGCGACCCCGCACTCTCAGTTCCCAGCACAAAAAACAACAGCTCAAGAAACCAGCACGGCCTTCCATAGATGGAGCTCTCAATCCAAATCAACATGATGAAGACTCGGAGCTTAACAAGGCTTCAATGGACAGTAATAATAGTATCGCCAACTTTAAAGCTGATGATTCTCTGGAGAATCTGAACCGTCCAAATGTACTACCTGATAATTCGGACTTAAACGCAAATGAAGCAGAGCAGGCTGAAGTGGTGGTCAACTTGAGAAATTGTTAGGCATGATAAAAGATGCTGAGAAAAACATCCTTCTTTTAAATCATGCGAGACTCCGTGCACTTGAAGATCTTGAGAAGATTATTGCTGAAAAGGAAGCATTGCAAGGAGAAATTGATGTCTTAGAGAAGAGGTTGGCAGAGACTGATGCGAAGATTNAAGTTGCCACCCAGGAAAAGAGACACGTGGAACTCTTGGAGGACCAGTTAGAGAAACTGCGTAATGAGTTGGCTCAAAAGGGAAGTACTGAAGGAAGAGATGCTGAATTGAGTGACCTTCAAAATGGAGTTTTGAGTCATAATGATAGCATTCATCCCCTTACCGAGGAGCTTAATTCATTAAGGGAAGAAAATGCCTCTTTGAAGAATGCCATAGAATCATTTAAAACACAGCTTAATGATGTCAAGAATAATGATGAACGTTTAGTGGTACTGGAAAAGGAACGGTCATCTTTGGAATCAGCCCTAAAAGATTTGCAATCAAAACTGTCATTATCTCAGGAAGATGGATCTAAACTGTCTGCACTTAGAGTTGAATGCAAGGATTTAGGGGATAAGGTTGNAAATTTGCAATCGCTGCTAGATAAAGCAAACAAACAAGCTGATCAAGCTATTATAGTGATGCAACAAAACCAAGATCTTCGAAGGAAGGCTGATAAATTGGAAGCATCCCTTGAAGAAGCTAACATCTATAAGCTATCATCTGAGAAATTGCGAAAATATAATGAAGTAATGCAACAAAAGATAAAACTATTGGAGGACCGTCTTCAAAAATCAGATGAAGAGATAAACTCTTATGTTCAGCTGTATCAACAGTCAGTTAAGGAATTTCAAGATACACTTGATACTCTGAAAGAAGAAAGCAAGAGAAGGGAACTGGATGAACCAGCTGAAGATTTGCCGTGGGAATTTTGGAGTCGGTTGTTGCTTCTAATTGATGGTTGGGCACTTGAAAAGAAAATATCGGTAGATGATGCAAAGCTTTTGAGAGAAAAGGTGTGGAAGAANGATAGACGTATTAGTAATATATATATGGCTTGCAAAGAAAAGAGGGAACATGAGGCTATTACTGCATTTCTTGGNCTTACATCACCTGCAACAAGTCCAGGATTACATGTGATTCATATTGCAGCAGAGATGGCACCAGTAGCTAAGGTTGGTGGTTTGGGGGATGTTGTCAGTGGTCTAAGTAAAGCATTGCAAAAGAAAGGACACCTTGTTGAAGTTGTGCTTCCCAAATATGATTGTATGCAATATGACCGCATCGGTGACTTAAGAGTTTTGGATGTGGTAATAGAGTCATACTTTGATGGTCAATTATTCAAAAATAAAATCTGGGTTGGCACTATTGAAGGCCTTCCTGTTTATTTCATTGAGCCCCTTCATCCTGATAAGTTCTTTTGGAGAGGAAATTTTTATGGCGAGCATGATGATTTCAGAAGATTTTCATTTTTTAGCCGTGCGGCTCTCGAATTTCTTCTTCGAGCTGGCAAGAAACCAGATATCATTCATTGCCATGATTGGCAGACAGCATTTATTGCTCCCCTATATTGGGAGATATATGCCCCAAAAGGATTGAATTCAGCTAGGATATGTTTTACATGCCACAACTTTGAGTATCAAGGGACTGCAGCAGCTTCAGAGTTAGAATCATGTGGTCTTGATAGCCACCATCTAAACAAACCAGATAGAATGCAGGACAACTCAGCACATGATAGAGTCAATTCTGTCAAGGGTGCAGTTGTTTTCTCGAACATTGTAACAACAGTGTCTCCTACTTATGCCCAAGAAGTGAGAACTGCAGAGTTAGGTCGAGGCCTCCATTCAACTCTCTCCACCCACTCCAAAAAGTTCATCGGTATTCTTAATGGTATTGACACTGATGCATGGAATCCTGCCACTGATACATCTCTTGAAGTCCAGTACAATGCAAATGATCTTCAAGGGAAAGCAGAGAATAAGGAAGCCTTGAGAAGGAATCTAGGTCTTTCATCTGCAGATGTTAGGAGGCCATTGGTTGGCTGCATAACAAGATTGGTTCCACAAAAAGGTGTTCATCTTATTAGACACGCAATATATCTAACATCCGAGCTGGGAGGACAATTTGTTCTACTTGGTTCAAGTCCAGTGTCACAAATTCAGAGAGAATTTGAGGGCATTGCTAACCACTTCCAGAATAATGATCACATAAAGTTNATATTGAAGTATGACGAATCTCTCTCTCATGCCATTTATGCTGCATCTGACATGTTCATCATTCCATCGATCTTTGAACCTTGTGGCCTAACACAGATGATATCAATGAGATATGGTGCCGTACCTATTGCCAGAAAAACTGGTGGTCTAAATGACAGTGTGTTTGATGTTGATGACGATACAATACCTTCTCAGTTTCGAAATGGATTTACATTTTTGAATGCCGATGAGCAGGGAGTAAACGGTGCCTTGGGACGTGCATTAAATCTCTTCAGGAACGATCCTGAGAGTTGGAAGCAACTCGTTCAGAAGGTCATGAACATAGATTTCAGCTGGGATTCTTCAGCAGCACAATACGAGGAGCTCTACTCAGCGTCTGTGGCAAGAGCAAGGGCAGCAAAACGTGCTTAATTCAGCAAAAGGAGGCTTTCCTGTGCATATCCATTCANTTTTGTCAGCTTCCTACATAGAGATGGGAGGAGCTCAGAGTTCATNCTCAATCAGCAGGAATTAACTGAGCATACCTGCCATGCGACAACATCTCTAATTGAGAATATTATGCATATAAAGAATGACATTGTCTGCTGAAACTATGCTGCTAGATCTTAGAAGCAACCTTTCTTATACATTGATGAATTCTAGGTGATATTCCACCTTCCCCATACCTCGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00183	34278	44324	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT5

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009250 glucan biosynthetic process

molecular_function
GO:0009011 starch synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000183s00013022.1	PF08323.6	Glyco_transf_5	370	610	1.20E-65
Glyur000183s00013022.1	PF00534.15	Glycos_transf_1	667	788	9.00E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.456
SRR1783600	control	3.523
SRR1783602	moderate drought stress	3.699
SRR1811619	moderate drought stress	3.689

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.543
DRR006520	Root Summer glycyrrhizin high producing strain	4.320
DRR006521	Root Winter glycyrrhizin high producing strain	3.667
DRR006522	Root Winter glycyrrhizin high producing strain	3.629
DRR006523	Root Summer glycyrrhizin low producing strain	4.020
DRR006524	Root Summer glycyrrhizin low producing strain	3.904
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.930
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.077

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.148
SRR2868004	Drought Stress (root)	7.358
SRR2967015	Control (root)	9.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.672
SRR9715740	Leaf	13.898
SRR9715741	Leaf	10.279
SRR9715739	Root	0.443
SRR9715742	Root	2.518
SRR9715743	Root	2.460

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.910
SRR8749028	MeJA induced 9h	2.666
SRR8749029	MeJA induced 9h	2.050
SRR8749030	Uninduced	2.258
SRR8749031	Uninduced	1.614
SRR8749032	Uninduced	1.091

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.219
SRR8400027	Control - Root	7.963