Gene detail

Gene detail information of Glyur000182s00014548

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27450.1	6.00E-116	Aluminium induced protein with YGL and LRDR motifs
NR	XP_004487686.1	8.78E-170	PREDICTED: stem-specific protein TSJT1-like [Cicer arietinum]
COG	YP_001971360.1	2.00E-06	asparagine synthetase B [Stenotrophomonas maltophilia K279a]
Swissprot	tr\|P24805\|TSJT1_TOBAC	2.00E-31	Stem-specific protein TSJT1
trEMBL	tr\|C6THW8\|C6THW8_SOYBN	3.00E-169	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G35070.1}

Sequence

Transcript Sequence

>Glyur000182s00014548.1
CTTCCGGGTAGGTACTATTACTATATGTAGCCCATTGATCTAACCATATATATATATATAAATATCACAGCAAACCCTGCTTGACAATCCCTGCTTTTTCCATTAATTTTAAACCTTCATTCAATAACCAAAAAATGTTGGCCATTTTCCACAAGGCTTTTGCTCATCCACCAGAAGAGCTAAACAGCCCTGCATCTTTCAAAGGTTCAAAGAAGCCTAAGCTCCCTGAGGAAACTCTCAAAGATTTCCTCTCCCATCACCCTCACAACACTTGCTCCACGAGCTTTGGACAAGCCGCTGTACTGGCTTACGTTCGCCCAGATAATCCTTTCTCTGTTAATCAAAGGAAGTTCTGTGGGCTTGATGACATATACTGCCTCTTCTTGGGGAGCCTGAACAACTTGTCTTTACTCATCAAGCAATATGGTTTGTCAAAGGGTACTGATGAGGCCATGTTTGTGATTGAAGCTTATAAGACTCTTCGTGACCGTGGTCCATACCCAGCAGATCAAGTTGTGAAGGACCTTGATGGAAGCTTTGCCTTTGTTGTCTATGACAGCAAGGTTGGCAGTGTCTTTGCTGCACTGGGTTCTGATGGTGGAGTGAAGTTGTATTGGGGTATTGCAGCTGATGGATCTGTGGTGATCTCTGATGATCTTGAAGTCATAAAAGAGGGTTGTGCCAAATCCTTTGCTCCCTTTCCAACAGGGTGTATGTTTCACAGTGAAGCAGGTCTAATGAGCTTTGAGCATCCAATGAACAAGTTGAAGGCAATGCCAAGGATAGATAGTGAAGGAGTGATGTGTGGGGCCAACTTCAAGGTTGATAAGTTCGCCAGAGTCAATAGCATTCCTCGAGTGGGAAGTCAATCCAATTGGATGGAATGGGACCAACATTAGCTTCAATATGTAAATAATATAAACCTCATGGTGTTGGGAGTCCCACATCGGATGGTCAGGAGCCTGTGCGGTGTTTATAAAACTGGGGAGTCTCTCCTCCCATGAGTTAGTTTTTGGGGTATGAGCTGTGAGCCCAGCTGAATTTTCAGATATGGTTCATGTAAAATTAAAATGTTGTCTATGCTTCTTATTCCCTAGCTACCCCTACCCTGCTCTACACTTCTGAATTTGTCTTAGTTCTGCTTTCTTGTGTAATTTTTTCTCTCCCTCTTTCCTTCTGAGTAATTTAAGTGTTTTTTTCCAAGACATAGTGTCATGTAATGTTGATTGTTGACGAGGTGCAAGTGATTGAGAGACATTAACATGGTTCAAAATTTTTTTTTTTGGTGGAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00182	258509	260312	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000182s00014548.1	PF12481.3	DUF3700	2	230	3.40E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	112.368
SRR1783600	control	112.453
SRR1783602	moderate drought stress	222.956
SRR1811619	moderate drought stress	217.307

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	152.965
DRR006520	Root Summer glycyrrhizin high producing strain	151.499
DRR006521	Root Winter glycyrrhizin high producing strain	1933.629
DRR006522	Root Winter glycyrrhizin high producing strain	1883.907
DRR006523	Root Summer glycyrrhizin low producing strain	502.942
DRR006524	Root Summer glycyrrhizin low producing strain	503.194
DRR006525	Leaf Summer glycyrrhizin high producing strain	160.416
DRR006526	Leaf Summer glycyrrhizin high producing strain	160.588

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	115.329
SRR2868004	Drought Stress (root)	269.739
SRR2967015	Control (root)	608.744

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	87.432
SRR9715740	Leaf	161.991
SRR9715741	Leaf	177.428
SRR9715739	Root	152.915
SRR9715742	Root	173.159
SRR9715743	Root	168.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	670.131
SRR8749028	MeJA induced 9h	1701.704
SRR8749029	MeJA induced 9h	1467.119
SRR8749030	Uninduced	1515.240
SRR8749031	Uninduced	1931.402
SRR8749032	Uninduced	2187.993

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	91.489
SRR8400027	Control - Root	76.176