Gene detail

Gene detail information of Glyur000182s00014544

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15470.1	0	Transducin/WD40 repeat-like superfamily protein
NR	XP_004487750.1	0	PREDICTED: uncharacterized protein LOC101506788 [Cicer arietinum]
COG	YP_007125556.1	3.00E-18	WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q6S7B0\|TAF5_ARATH	1.00E-09	Transcription initiation factor TFIID subunit 5
trEMBL	tr\|A0A072VAE7\|A0A072VAE7_MEDTR	0	Transducin/WD-like repeat-protein {ECO:0000313\|EMBL:KEH38772.1}

Sequence

Transcript Sequence

>Glyur000182s00014544.1
CAGAAACATTGCTCCCTGGCCGAACCCCAACTTCCCCCATCCCACGCCACACACAGCGTGGGCCTTCATTCCCCTTCCTTCCTCCGAATCAAACCCCTTCTCTTTCATTCCACACTCTCTCTCTCTCTCTAAGAGTCTGTGGTGGCGTTTCGGAATTGGATCTGAGTGTGCAAAGTGTGAATCGTGAGAGGGTGATCTCATCTGAAATCGATTGATTCGATTGGTGTTGTTTGGTTGCTGAGATAGGGAGAGAGCGGGAGGGGCATTTTCATTGAAATGGGAATGCCCAAACCCAACCTCAACAACAACCCCAACGAACCATGAGCAAAGCCGTGGGATGTGACGAAGAAGAAGACAACAACAACAACACCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGTGCTTCTACGAATCCCACGACCGTTTGCTCTCCCTCTCTTCCTCCTGTTCCTGCTCCAACTCCAACTCCGACGACGAAGAAGAAGGAAACTGCAGCAGCAACAACAACAACAACAANAATAATAATAATTACAATTTCGCCCTCAACAGTTACGACATATGGATCTCCCAACCCTCCTCCGTCTCCGAACGCCGTTCCCGCCTCCTCCAAACCATTGGCCTCTCCTCCGACCTCTCCCTCTCTCGTGTCTCAAACAATGCCATCTTCCGATCCAAATCCGACGGTTCCTCTCCCTCTCGCCACCGCCACCACCACAATTCTAACAACAACGACGACATAAACGACAACGAAAAATACAAAAACGACAACCCTTCCTCTTCCTCTTTTTGTTCTTCTCTTTCTCTTCACTCGGCCGCCGCGTCCTCTGTAAATAATGGCGGTTCCCCTGGGAAGCCTCCCTCCGGGAAGAATTGCCGGAGGAGCCAATCCAGTGCGGATTTCGGCCCCGGGACTTCTACTTCTGCGGTTGCGGCGGAGGAACGAGCGGAATGCGGTGGTGACGAGGTGGAGAGGGGGAACGAGGGGGCGTGCACGATAAGGGATCTCGACAACGGGAAGGAGTTCGTGGTGAAGGAAGTGAGGGAAGATGGGATGTGGAACAAGTTGAAGGAGGTTGGGACTGGGAGACAGTTGACCATGGAGGAGTTCGAGATGACTGTTGGTCATTCCCCGATCGTGCAGGAGCTTATGCGCCGCCAGAACTTCGAGGAATCCAATGTGGATTCCAATGGAGGTGGTGATGGTGGCAGTGGGAATGGGAATGGCAATGGGAACTCTTGTAAGGTGAAGAAGAAAGGAGGGGGTTGGTTGAAGAGTATAAAGAATGTGGCGAGCTCAATGGCGGGTGGTGGTGGTGGTGGTAGTGGTAATAAGGAGCGGCGGAGCAGCGATGAGAGGGACACCTCGTCGGAGAAGGGAGGGAGGAGGTCGAGTTCCGCCACCGATGATAGCCAGGATGGGACTTTCCATGGACCTGAGAGGGTGAGGGTGAGGCAGTATGGGAAGTCGTGTAAAGAGGTGACCGCATTGTACAAGAGCCAGGAGATTCAGGCACATACGGGATCCATTTGGAGCATTAAGTTTAGTCTTGATGGGAAGTACCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAGTCTGAGAGGAGAGGGGAGCTGCTGCTCATGGACAAAACGGAAGATGTGAATAGTAATGTCAATATGTTGTTCCTTGTTAATGGGTCGCCGGAACCTGCCGCGNTATTGTCGTCGTCCCCTATGGGGGACAACCATCCGGAGAGGAAGAGGAAAGGAAGGTCATCCATTAGCAGGAAGTCGTTGAGCTTGGACCAGTTTGTGGTTCCTGAAACCGTGTTTGCACTCACTGAAAAACCCATTTGTTCTTTTCAAGGCCATCTACATGATGTACTTGACCTCTCCTGGTCCAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTATCTAGCAAGTCTTGTTTGAAAATTTTTTCACACAGCGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATTTGGAGCATTCCTGATCGGCAAGTTGTTGACTGGACTGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGATCATACAAGGGTAGCTGTCATTTGTATAATACATCTGAAAATAAGTTACAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCGCATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAACTAGCCAGATTTCAGCCTCCCTTACAGCAAATGGTAAATATATTGTCGCAGCAAGCGAGGATTCCCATGTATACATCTGGAAAAATGAAGCCGATTGCAGGCCTAACAGAAGTAAAGGCGTCACTGTCACACGTTCCTATGAACATTTTCACTGTAAAGATGTGTCAGTTGCCATTCCCTGGCCTGGCATGGGTGATGTATGGGACATGCATGATACATTTTCTGGAGAACAACCTGAGCTTGATAACAACGTCGATGAAGTCACATCAGCCAATCACCCTCCTACCCCTGTAGAGGAAAACTTTGGTACTGAGNGTTCAAGATCTGCTTCAGGTTACAATAGTCCTCATCATGCAACCATTGCAAGTGCAACAAACAATTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTACCTGCAAGAACTCAAAGCCCTCGTGTCAGTTTGGATTTCTCAAATGGGGTCAGTAAAAAAATGTCAGCTTGGGGTATGGTGATTGTAACTGCCGGCCTTCGAGGGGAAATTAGAACTTTCCAAAATTTTGGATTACCACTACGGATATAAGAGGTGATAGAATATGCATGCCTATATGCATGGCGGAAAGTGAGTTGGATATCAAGCTCAGAAGGCAGTAGACTTCACCTTCTCCTTTAGTTGGCGAAAACCTGTACAGAAAAAGTGGGTGAGATTTGTAATATTAGCGGGGTTCCATTTCTTTCCTTTGTTCTTGTGCTTGTTGGATGAAAATAGGTTGTCATTCCATTCATTCAGGCACTTGGGGGAAAAAAAAGGGCGGGGGAGGGGGGTAAACATTGTGAAACAAAAACCAAAAAAACCAAAGAAAAAAAGTGGGAAAAAAAAAGGTACACCAGGAATTTAGAAACCGATGGATGTAATCGGGAAATGTAGAGTAACGCGAGTATGGGAAAAGCTTATTGAAATTAGAAATGATGATTCTTTTACACTTGTCTTGAGTTTTTGTTGTGGAATTCAATATCTTTTCCAAGTAAATCAATTCCAAATAAATAGCATGGATGTAAGTGTTAGCATCACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00182	244346	250372	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000182s00014544.1	PF00400.27	WD40	395	428	2.50E-09
Glyur000182s00014544.1	PF00400.27	WD40	510	546	8.40E-09
Glyur000182s00014544.1	PF00400.27	WD40	557	588	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.355
SRR1783600	control	14.294
SRR1783602	moderate drought stress	15.107
SRR1811619	moderate drought stress	14.928

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.815
DRR006520	Root Summer glycyrrhizin high producing strain	5.861
DRR006521	Root Winter glycyrrhizin high producing strain	8.681
DRR006522	Root Winter glycyrrhizin high producing strain	8.523
DRR006523	Root Summer glycyrrhizin low producing strain	5.994
DRR006524	Root Summer glycyrrhizin low producing strain	5.875
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.999
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.934
SRR2868004	Drought Stress (root)	27.356
SRR2967015	Control (root)	24.801

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.460
SRR9715740	Leaf	9.125
SRR9715741	Leaf	11.023
SRR9715739	Root	3.145
SRR9715742	Root	16.744
SRR9715743	Root	14.544

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.809
SRR8749028	MeJA induced 9h	14.971
SRR8749029	MeJA induced 9h	6.872
SRR8749030	Uninduced	3.999
SRR8749031	Uninduced	1.327
SRR8749032	Uninduced	2.144

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.510
SRR8400027	Control - Root	24.769