Gene detail

Gene detail information of Glyur000182s00014526

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15510.1	2.00E-08	NAC domain containing protein 2
NR	XP_007149615.1	2.28E-83	hypothetical protein PHAVU_005G084600g [Phaseolus vulgaris]
Swissprot	tr\|A0SPJ9\|NAM2_HORVD	2.00E-07	NAC transcription factor NAM-2
trEMBL	tr\|V7BUF5\|V7BUF5_PHAVU	9.00E-84	Uncharacterized protein {ECO:0000313\|EMBL:ESW21609.1}

Sequence

Transcript Sequence

>Glyur000182s00014526.1
ATGCCTTCTTCTGTGGAAGCCATAGCCCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACACATAGGTCACCAATTGAACACGAGAGGGAAGANTCAATGGATGATATGATTGGAGGGGTGCCTCCTTCCATAAACGTGGGCCACATGAATGCGAGGTTTCATCATCTATCAAAGAATCTGTCCACAAGCTACACCAATGCATTGTTGGAAAATGACCACCAGAACAATCTATTGGAAGGAATGATGATGAGTAGTACTAGTAACGGTGCTGTGGGAGCCTCAAACTCAAAGGCAGAGCTTCCTTTTGTTCCAACCATGACTACTACAGCATCCTCAAATGCTGCTAATTCTGCCTCCAAGAGAACACTCTCTTCCCTTTATTGGAATGATCATGAGGATGTTGTGGCAGCAGGTACCTCATCATCGAACAAAAGGTTCAATTTGGAGAGNGGGGATCATAGTGTTGTGAGGACTGATCATCAAGAGAATGGAACTACTGTTACTACCTCTTTTGCAACTCTGCTTAACCAACTCCCTCAAACCCCCTCTTCATTGCACCAACAAACAATGCTTGGATCAATAGGTGATNGCTTGCTTCGTGCACCATATCAAATACCAGGAGTGAATTGGTATGGTTAATTAAGCTCAATTTCAAAGTAAGTTAATTTGTGTATATAGGGGGTGGTGGTATATATAAGATCATGATTGATTATATTATTGATGCACAAGGAAAGGTATTGAACTTAGAAGGAATTCTTAATCCTCACCCTGGTGGTACCTTACACACTAGATTGTAAAGATTTTTAATGGGCTATTGAGATTTTGGTTGTTAAGAATTTGGAAGAAGCAAGTTGAGTTTAATCAAAATCAATTAGATGGCCTCTCTTCAATTCAGCCATTGGAGGCAGCAGATGCAGCCAACAGGTGAGGCCATATGGATATTTTTAGTTAAACTTAAATATAGCTTTATACATATCTATAGATATTTGCTTGTTTATTGGTTTATAAATAAAAAAATGGTTGGTGGTGCTAGCTGATCTTCATGTACAAATGTTCAGAGGGAAGAAAAAAAATTCAAAAGAGAGAGAATCAATAGCTATATATATTTTTATATATACATTGATATAGGATACCATACCAGAGAACCTTGTATATATAGATCATATACTGTAGAACACGATCTATTGATGCAAGAATTAAAAAAAAAAAACAAATGGTGACTATGATTTGTCAATTAATGTATTTTGTATTGTTCTCTCAAGAGCTTAATATTGATTTATTATCATTCTTCAATATTGACTTTTTATGATCAGATACTAGCTAGTTTGTTCAAGTGTAATATACATATGGAAACCAATTATCGGTCATGTCTCTGCATGTAACCTAGCTAGCTAGCTGGGAGGTTATTAGTCTTAATCATATCTTATCCTTTTGCCCAGAATCATTCCCTATGAATCTAAATGAGTTGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00182	120825	123217	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.246
SRR1783600	control	1.183
SRR1783602	moderate drought stress	11.633
SRR1811619	moderate drought stress	11.353

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.230
DRR006520	Root Summer glycyrrhizin high producing strain	4.176
DRR006521	Root Winter glycyrrhizin high producing strain	22.661
DRR006522	Root Winter glycyrrhizin high producing strain	22.265
DRR006523	Root Summer glycyrrhizin low producing strain	10.829
DRR006524	Root Summer glycyrrhizin low producing strain	11.330
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.929

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.005
SRR2868004	Drought Stress (root)	7.765
SRR2967015	Control (root)	10.877

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.818
SRR9715740	Leaf	34.557
SRR9715741	Leaf	23.058
SRR9715739	Root	1.219
SRR9715742	Root	2.892
SRR9715743	Root	1.621

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.707
SRR8749028	MeJA induced 9h	174.791
SRR8749029	MeJA induced 9h	54.694
SRR8749030	Uninduced	40.926
SRR8749031	Uninduced	48.842
SRR8749032	Uninduced	51.525

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.806
SRR8400027	Control - Root	2.157