Gene detail

Gene detail information of Glyur000182s00014522

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G54440.1	CLUB
NR	KEH38795.1	trafficking protein particle complex subunit-like protein [Medicago truncatula]
Swissprot	tr\|F4K0C4\|TR130_ARATH	Trafficking protein particle complex II-specific subunit 130 homolog {ECO:0000305}
trEMBL	tr\|A0A072VKX8\|A0A072VKX8_MEDTR	Trafficking protein particle complex subunit-like protein {ECO:0000313\|EMBL:KEH38795.1}

Sequence

Transcript Sequence

>Glyur000182s00014522.1
TGACAGCTGAGCCAAGGGTCCGATGAAATGTGCGAATGTCGATTGTGGTACACCGCGAAGCACTGGATATGCGGAGCCGTGACCTCTGAACTCGATCACCGAACTCAGAATACTCTCACTGCACTTCACTGCACTGAACTACACAGCAGTTCCTTCTCTCTCTGTGATTTGATTTCCATGGATCTTTGCTGATTCCACAGATCCAACATGGCCAACTTCCTCGCTCAGTTCCAAACCATTAAGAACACCTCCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGACTTGTGGCCAACTGTCAAGACTGCTTTTGAGGCACGATTGCCATTTAAAAGGGCGACTTTGAATAACAAGACAAGGAACCCTGTCGTTGTTGAGACATTGCCTGCCGATTTCATATTAACTACAGATTCGAGACTTCGTAGCCGGTTCCCTCAGGAGCAGTTGCTGTTCTGGTTTCGGGAGCCGTATGCAACCATTGTGCTCGTTACCTGTGAGGATCTTGATGAGTTTAAAACCATCCTTAAACCGCGTCTGAAATTAATTGTCCAGAATGATGAAAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCGAATGATCAGGGTAACAAAATGGCGAAGAAAGTATATGCTAAACTTGAAGTCGAGTTTAGCTCCAGAAAAAGAGAAAGATGCTGCAAATATGATATGCATTTCCCTGAAGCAAATTTTTGGGAAGACCTGGAGTCAAAAATAACGGAATGCATCAGAAATACACTAGATAGGCGTGTACAGTTTTATGAGGATGAGATACGAAAGCTCAGTGAACAGCGCCTCATGCCAGTCTGGAACTTCTGTAATTTTTTCATTCTTAAGGAAAGCTTGGCTTTTATGTTTGAAATGGCTCACCTTCATGAAGATGCCTTACGGGAATATGATGAGCTAGAACTCTGCTATCTTGAAACAGTTAACATGGCTGGAAAGCAAAGAGACTTTGGAGGGGCAGACCATGGTGATGATCAGGCAGCAATTCTTAATCCAGGAAACAAAGCATTGACACAGATTGTTCAAGAGGATTCGTTTAGGGAGTTTGAATTCAGGCAGTATTTATTCGCCTGTCAATCAAAGCTATTATTCAAGCTANGTCGTCCCATTGAGGTTGCATCACGAGGTTATTCGTTCATAATAAGCTTCTCAAAATCCTTGGCATTGCATGAGCGTATTCTGCCTTTTTGTACGCGTGAAGTCTGGATGATTACTGCTTGCCTGGCTTTAATTGAAGCAACCACTTCCAACTATAGTGATGGACTTATGGCGCCTGACATAGAGAAGGAGTTCTTTCGCCTACTGGGTGACCTATATTCTCTAGCTAGAGTTAAGTTCATGAGGCTTGCCTATTTAATTGGGTATGGAACTGAAATAGAANGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCCTAAGCCAGCTGCTTGGCCTTCAGTTCCTGCTGATGCATCAGCAGAGGTGCTTCAGAAAGAAAAGTTGATTCTTCAAACAACTCCTAGAACCAAGCACTTTGGTATCCAGAGGAAACCCCTGCCTCTTGAACCTACTGTGCTTCTACGAGAGGCCAACAGGCGGAGGGCTTCACTCTCAGCTGGAAATGTGTTTGAAATGGAAGGATCAGGTTTTGATGCATCCACAAAGATGTCACCACAAAAAGTACTTGCAAATTCCATGTCACGCACTAATTCTTCACCAGGAAACTTCGATAGCTCAATTGACCGACCTATGAGGCTTGCTGAGATTTATATTGCTGCTGAACATGCTTTAAAGCAAACAATTTCTAATCCAGAACTGTTGAAATCATTATCATCATCTGAGGAGTTTGAGAAAAAATATTTAGAGCTAACTAAAGGTGCTGCTGACAATTACCATCATTCCTGGTGGAAAAGACATGGAGTTGTGCTTGATGGTGAGATAGCTGCTGTTGCCTTTAAGCATGGACATTTTGATCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTGTATGCTGGTGAAGGATGGCAGGAATTGTTAGCTGAGGTCCTTCCCAATTTAGCCGAGTGTCAGAAGATACTTAATGATCAAGCTGGCTACTTACTATCCTGTGTGAGGTTACTTTCTCTTGATGAAGGACTATTTTCGACCAAGGAGCGTCAAGCTATTCAGTCAGAAGTGGTTCGTCTTGCTCATAGTGAAATGAAGGACCCTGTACCTCTTGATGTATCATCATTAATTACATTTTCTGGAAATCCTGGGCCTCCACTGGAGTTATGCGATAGGGATCCTGGTATCCTTTCTGTAACTGTGTGGAGTGGTTTTCCAGATGATATAACTCTTGACTCAATCAGTCTTACACTAATGGCAACATATAACGCAGATGAAGGGGTAAAGGCATTGAAGAAGTCTACAGCTATCGTGTTACACCCTGGTCGGAATACTATTACCTTGGATCTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTTACTGGGCAGATTGGGCAGTTGAGGTTTAGGTCTCATGGTTTTTCAAAAGTTGGTCCTGAAGATAATGATGATGTTATGAGTTATGAAAAGCCAGCTAAACCCATTTTGAAGGTTTCCAAACCTAGAGCCCTTGTTGATCTTGATGCTGCTGTTTCATCTGCTTTGTTAATAAATGAACACCAATGGGTTGGCATTTTAGTTCGGCCGTTAAAGTACTCCCTCAAAGCTGCTGTCTTGCATATTGATACTGGTCCAGGGTTGGAGATTGACGAGTCANACATAATTGAGATGGAAAGCTGTGCTGGTGTATCACAGAATGACGATGACCAGGCACAGAAGGATGATGCTCAAATAAATTCTTTGAATTCTGGGAAAAAATTTGAACGTTTGACTCTTCATGATGGTAAAATAGAGTTTCCGAATTGGGCAAGTGACACTCCTTCTATACTTTGGGTTCTGATTCGTGCCATCAGTGACACGCTCAACAGAGGATCATCTTCAGCCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTAAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTGCATTTTACATATCCTTTCTATGTGAGGACACGTGTTACTGATAAATGCAATGATGGTACCCTGCTTCTGCAGGTAATACTTCACTCTGAAGTAAAGGCGACATTGACTATATATCATGCTTGGCTTGATCTACAAGATGGATTTGTTCATACTGGACAAACTGAGGGTAGACCTAATTCAAGCTTCTTCCCACTAATCATATCTCCCACTTCCAAAGCAGGAATTTTGTTTAGCATCTCCCTAGGCAAGACAAATNTAGAAGAAGCAGCCACAAAGCGACCAGAAAGCATATTAAATATCAAATATGGAATTTCTGGTGATAGAACAGTTGGAGCCCATTCTCCTTTCATGAATGAATCTACTGGAGTTGATGGTTCTGGACAGGAGTTGATCTTCAAGAGTGCAATTACTTTGCAAAGGCCTGTGCTTGATCCATGCCTGGCCGTTGGTTTTCTTNCTCTCCCTCCAGATGGCCTTAGAGTTGGACAACTAGTTAAGATGCAATGGAGAGTGGAAAGATTAAAGGATTTGGCTGAGAAAGAAATTTCTGAACAGAATGATGAGGTGCTGTATGAGGTAAATGCAAATTCTGGAAATTGGATGATTGCTGGAAGGAAAAGAGGACATGTATCTCTCTCCACAAAACAAGGTGCAAGGATAATTATCTCAGTATTGTGCATGCCACTGGTAGCTGGTTATGTTCGTCCTCCTCTGCTTGGGCTACCAGATGTTGATGAGGCAAATATAAGGTGCAAACCTGCTGGGCCTCATCTGGTTTGTGTTTTGCCCCCGGCACTCAGCTCATCCTTCTGTATTCCAGTTAATTCATGATCTTACACTATGTTTCCACTCAAGCTTGATCGAGTGTTTGTGTTCAATAGGAAGTTTGAGAAATTTTGGTGTCAGTGAAATAGGAAAGTGTAACTTTTTTCTGTTACCTTCGTTGCATGAAAAATCTCCATAGTTGAATTTGTGTTGCTTACGGCCTTCAGGCAGTTTTTAGAGTGTCAACACTCTAGTGTGTATAGTGGAATTTTGTACGGTAGATACACAAACCATAACATTCTTTTGTCTCGTATT

Protein Sequence

>Glyur000182s00014522.1
MANFLAQFQTIKNTSDRLVISVEDVSDLWPTVKTAFEARLPFKRATLNNKTRNPVVVETLPADFILTTDSRLRSRFPQEQLLFWFREPYATIVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQGNKMAKKVYAKLEVEFSSRKRERCCKYDMHFPEANFWEDLESKITECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNMAGKQRDFGGADHGDDQAAILNPGNKALTQIVQEDSFREFEFRQYLFACQSKLLFKLXRPIEVASRGYSFIISFSKSLALHERILPFCTREVWMITACLALIEATTSNYSDGLMAPDIEKEFFRLLGDLYSLARVKFMRLAYLIGYGTEIEXSPVNSASLSLLPWPKPAAWPSVPADASAEVLQKEKLILQTTPRTKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFEMEGSGFDASTKMSPQKVLANSMSRTNSSPGNFDSSIDRPMRLAEIYIAAEHALKQTISNPELLKSLSSSEEFEKKYLELTKGAADNYHHSWWKRHGVVLDGEIAAVAFKHGHFDQAAKSYEKVCALYAGEGWQELLAEVLPNLAECQKILNDQAGYLLSCVRLLSLDEGLFSTKERQAIQSEVVRLAHSEMKDPVPLDVSSLITFSGNPGPPLELCDRDPGILSVTVWSGFPDDITLDSISLTLMATYNADEGVKALKKSTAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLRFRSHGFSKVGPEDNDDVMSYEKPAKPILKVSKPRALVDLDAAVSSALLINEHQWVGILVRPLKYSLKAAVLHIDTGPGLEIDESXIIEMESCAGVSQNDDDQAQKDDAQINSLNSGKKFERLTLHDGKIEFPNWASDTPSILWVLIRAISDTLNRGSSSATTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTYPFYVRTRVTDKCNDGTLLLQVILHSEVKATLTIYHAWLDLQDGFVHTGQTEGRPNSSFFPLIISPTSKAGILFSISLGKTNXEEAATKRPESILNIKYGISGDRTVGAHSPFMNESTGVDGSGQELIFKSAITLQRPVLDPCLAVGFLXLPPDGLRVGQLVKMQWRVERLKDLAEKEISEQNDEVLYEVNANSGNWMIAGRKRGHVSLSTKQGARIIISVLCMPLVAGYVRPPLLGLPDVDEANIRCKPAGPHLVCVLPPALSSSFCIPVNS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00182	89155	104299	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000182s00014522.1	PF11817.3	Foie-gras_1	556	648	1.20E-06
Glyur000182s00014522.1	PF12584.3	TRAPPC10	1112	1220	2.10E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.963
SRR1783600	control	18.989
SRR1783602	moderate drought stress	13.927
SRR1811619	moderate drought stress	13.883

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.843
DRR006520	Root Summer glycyrrhizin high producing strain	16.813
DRR006521	Root Winter glycyrrhizin high producing strain	9.780
DRR006522	Root Winter glycyrrhizin high producing strain	10.050
DRR006523	Root Summer glycyrrhizin low producing strain	16.325
DRR006524	Root Summer glycyrrhizin low producing strain	16.675
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.001
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.780

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.795
SRR2868004	Drought Stress (root)	31.093
SRR2967015	Control (root)	33.583

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.462
SRR9715740	Leaf	15.859
SRR9715741	Leaf	18.078
SRR9715739	Root	2.687
SRR9715742	Root	17.679
SRR9715743	Root	14.867

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.406
SRR8749028	MeJA induced 9h	27.978
SRR8749029	MeJA induced 9h	11.785
SRR8749030	Uninduced	6.161
SRR8749031	Uninduced	1.368
SRR8749032	Uninduced	3.053

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.097
SRR8400027	Control - Root	28.398